PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011541
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CO-like
Protein Properties Length: 425aa    MW: 47954.6 Da    PI: 4.612
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011541genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.72.4e-082770340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +r C+ + +k+++++C  ++ +lC+ C +  H+       H++v
  DCAR_011541 27 ARACDSCVRKRARWYCAADDAFLCQGCDSMVHSAnqlasrHERV 70
                 578*****************************657788888876 PP
2CCT68.41.9e-23371413143
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                  Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+
  DCAR_011541 371 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRIKGRFVKR 413
                  9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.8E-82572IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5942572IPR000315B-box-type zinc finger
PfamPF006431.1E-62770IPR000315B-box-type zinc finger
CDDcd000213.57E-82872No hitNo description
PfamPF062038.7E-18371413IPR010402CCT domain
PROSITE profilePS5101716.192371413IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MTTDTCNNIP SMDADRKIAN AIGGKTARAC DSCVRKRARW YCAADDAFLC QGCDSMVHSA  60
NQLASRHERV RLGTASSKPL SEMKAPEVLD PAPAWQSGFT RKARTPRHPK RTQKEKVSNT  120
STSPLVPEMG NEDYMFEETE AQLLYRVPVF DPFAAEFCNA SNESDNMMAD YGDDNFIPER  180
ESHEVCDLNN LPVLLPSEME LAEFAVDVET LLGTGFNEES CGIEGLGFID CKEESEYGDC  240
YQENRVKVED EEVQAAIIAC HFDPELDMSK ETLDWNFSYE DELEETKLVD EPEMITEEGK  300
EIGEKKQLLL RLNYEGVIVA WDNHGCPWTS GIRPEINPND CWLDMFRDTS SGQVAYGGSV  360
EGVMGGSDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRIKGRF VKRISFAGES  420
TYHT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381397RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237500.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A161WVP80.0A0A161WVP8_DAUCS; Uncharacterized protein
STRINGXP_010265147.11e-144(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.19e-91B-box type zinc finger protein with CCT domain