PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011714
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 694aa    MW: 78058.3 Da    PI: 9.8092
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011714genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07589638147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     ++Rt  ++k++w ++
      DCAR_011714 589 RRPFSVSEVEALVEAVEKLGTGRWRDVKMRSFddmNHRTYVDLKDKWKTL 638
                      678999********************9655445888***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.86E-6396472IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.906.0E-4401471No hitNo description
PROSITE profilePS5129416.321584643IPR017930Myb domain
SMARTSM007176.9E-8588641IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-10589639IPR009057Homeodomain-like
CDDcd116607.92E-18590640No hitNo description
SuperFamilySSF466893.59E-16590671IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MVVKKRQEYG FYGYQIPVIP RAPRSLRRSS LRKKLQDDGQ LCAFELLAAV AGKLLQESES  60
SASSNIAEGK VQLGINKDSI KKEQVEERVA RSACLDQESC VESVIFPESA APQRNTKSSL  120
KELPHIQTNS YFEHASVVTH SDILNKVGGD VKYDKYTSNS AAGSFPSKPE EIFNGDGKLC  180
NEAQRKSAVV EKQNEHLYMA NFSGSKDPRD YHVHSSRKLN NAEGSIKFSL CADRVPGVSF  240
PRHMNNVKIV DRDDDENYFR SNNLNSKIKP SRQQSYNKYR RMKKMTSRYW RTAPKWNDCE  300
FINTGRGNRP IYHKRKSIHS GGGYQRELHS KRRRLYDHRQ LCHYRSAYIF DQQASSDSIS  360
NSAKKTTKGD KSRTPALHKA IGPSSSEIGD KASFQSKDPR VKFSIKSFKV PELYIEVPET  420
ATVGSLKITV MEAVTAILEG GLHVGVVLQG KRVRDDNRTL QQIGISHNED LDTLGFTLEP  480
DFIKATSPIS CKDPELLLPC DEHQELSRSS VPVLDSVFFN SSIDQVPVSN LEKNVVGNQE  540
IVPYVPDVPM EISAPKALVP IPPVNANTLA IVPVNQKAKR PDPSQRRTRR PFSVSEVEAL  600
VEAVEKLGTG RWRDVKMRSF DDMNHRTYVD LKDKWKTLVH TASIAPQQRR GEPVPQELLD  660
RVLAAHAYWS QHQSKQHGKH QMDPPKLAGE VGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-585736771105Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313333KRKSIHSGGGYQRELHSKRRR
2330334KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017242709.10.0PREDICTED: telomere repeat-binding protein 4
TrEMBLA0A166BW630.0A0A166BW63_DAUCS; Uncharacterized protein
STRINGVIT_13s0019g01670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-86TRF-like 2