PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011730
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 190aa    MW: 21215.8 Da    PI: 8.7428
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011730genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-055779123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H+++H
  DCAR_011730 57 YSCSFCKREFRSAQALGGHMNVH 79
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.68E-65483No hitNo description
SMARTSM003550.0065779IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.245784IPR007087Zinc finger, C2H2
PfamPF139122.8E-65780IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEQYSHYLMW MKHSKQYHHI LNSSHFRGSS MKSWEEQAFV EDSQGPLGGF IWPPRSYSCS  60
FCKREFRSAQ ALGGHMNVHR RDRARLKQSS NTTNGSQETS DSNPSNFASS APAKASSCKE  120
ITNLPLFPEE SRVEGHVETK LCVGLNFGGG GDGKKRKREA VMLPFLLKAC SNEKEIDLEL  180
RLGDSSVVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A9e-145279229superman protein
2l1o_A9e-145279229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241159.11e-141PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A166BWP31e-139A0A166BWP3_DAUCS; Uncharacterized protein
STRINGXP_006486536.11e-36(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-26zinc-finger protein 10