PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_011771

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

MYB_related

Protein Properties

Length: 667aa MW: 74136 Da PI: 10.0599

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_011771	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.1	2.4e-14	578	623	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W++ Ed l d+v ++G+++W++Ia+ ++ R++k+c++rw + DCAR_011771 578 REAWSKKEDAVLCDLVSKFGPRNWNLIAKGIP-PRSGKSCRLRWCNQ 623 789***************************.9********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF103473	3.14E-28	18	228	IPR020846	Major facilitator superfamily domain
CDD	cd06174	1.68E-7	28	218	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	1.8E-13	29	225	No hit	No description
PROSITE pattern	PS01022	0	86	110	IPR018456	PTR2 family proton/oligopeptide symporter, conserved site
Pfam	PF00854	1.5E-90	97	507	IPR000109	Proton-dependent oligopeptide transporter family
SuperFamily	SSF103473	3.14E-28	299	549	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	3.0E-7	315	541	No hit	No description
PROSITE profile	PS51294	21.308	573	628	IPR017930	Myb domain
SuperFamily	SSF46689	3.8E-15	574	634	IPR009057	Homeodomain-like
SMART	SM00717	8.3E-13	577	626	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-13	578	623	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-19	580	634	IPR009057	Homeodomain-like
CDD	cd00167	2.15E-12	580	622	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006857	Biological Process	oligopeptide transport
GO:0016020	Cellular Component	membrane
GO:0003677	Molecular Function	DNA binding
GO:0005215	Molecular Function	transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MAPSAAAFPV AQQDINASIP TKPRKNSWRS AIFIIFVEMA ERFAFFGVTG NLVNYLNNVL 60 GMTISSAAKS FNVWLGVSTA VFPVLGAFIA DSYLGRFKTI LYSSIIYLVG LVLLTVSVSA 120 ISLVHRKPVF FLALYILSVG QGGHKPCVQT FAADQFDESV PEEKLAKSSF FNWYYLGVSL 180 GATLAIVFVI YAQENIGWAI GFGMPLIAIA GSLFIFLIGQ KTYKRAVPVG SPFTKFMQVL 240 VAAVRKRHVS EVHDGRGVCY QDVDRTAPAL ARTNQFKFLD KAMIIDEIDA SRQTRNEWRL 300 CSVNQVEEVK LIFRLFPVWI SCFMIGVVIG QQSTYFTKQG STMVRHFKIP PATLQVVSGF 360 TILTAGAIYD CFFVPVARKW TKHPSGITML QRMGIGIFIC VISMVVAALV ESKRVGIARK 420 HGLMDTPKSV VPMAIWWLVP QYMLCGLADV FAVIGMQEFF YNQVPEVMRS MGAAFYLSAV 480 GVGSFLSSAL ITVVQIISSK NGKVEGWLSG NNLNRAHLDY FYWILAGLSG LTLCFYIWVA 540 RGFEYKKIEW ETVQNTLTLI KAANDRGEAT KVDGRRVREA WSKKEDAVLC DLVSKFGPRN 600 WNLIAKGIPP RSGKSCRLRW CNQLDPCLKR KPFTVFRVEV FSWSGLVSYI VNKAGPNTKL 660 VRETDG*

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MAPSAAAFPV AQQDINASIP TKPRKNSWRS AIFIIFVEMA ERFAFFGVTG NLVNYLNNVL  60
GMTISSAAKS FNVWLGVSTA VFPVLGAFIA DSYLGRFKTI LYSSIIYLVG LVLLTVSVSA  120
ISLVHRKPVF FLALYILSVG QGGHKPCVQT FAADQFDESV PEEKLAKSSF FNWYYLGVSL  180
GATLAIVFVI YAQENIGWAI GFGMPLIAIA GSLFIFLIGQ KTYKRAVPVG SPFTKFMQVL  240
VAAVRKRHVS EVHDGRGVCY QDVDRTAPAL ARTNQFKFLD KAMIIDEIDA SRQTRNEWRL  300
CSVNQVEEVK LIFRLFPVWI SCFMIGVVIG QQSTYFTKQG STMVRHFKIP PATLQVVSGF  360
TILTAGAIYD CFFVPVARKW TKHPSGITML QRMGIGIFIC VISMVVAALV ESKRVGIARK  420
HGLMDTPKSV VPMAIWWLVP QYMLCGLADV FAVIGMQEFF YNQVPEVMRS MGAAFYLSAV  480
GVGSFLSSAL ITVVQIISSK NGKVEGWLSG NNLNRAHLDY FYWILAGLSG LTLCFYIWVA  540
RGFEYKKIEW ETVQNTLTLI KAANDRGEAT KVDGRRVREA WSKKEDAVLC DLVSKFGPRN  600
WNLIAKGIPP RSGKSCRLRW CNQLDPCLKR KPFTVFRVEV FSWSGLVSYI VNKAGPNTKL  660
VRETDG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4oh3_A	4e-87	14	547	17	570	Nitrate transporter 1.1
4oh3_B	4e-87	14	547	17	570	Nitrate transporter 1.1
5a2n_A	4e-87	14	547	17	570	PROTEIN NRT1/ PTR FAMILY 6.3
5a2n_B	4e-87	14	547	17	570	PROTEIN NRT1/ PTR FAMILY 6.3
5a2o_A	4e-87	14	547	17	570	NITRATE TRANSPORTER 1.1
5a2o_B	4e-87	14	547	17	570	NITRATE TRANSPORTER 1.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017240919.1	0.0	PREDICTED: protein NRT1/ PTR FAMILY 5.4-like
Swissprot	Q9M1I2	0.0	PTR46_ARATH; Protein NRT1/ PTR FAMILY 5.4
TrEMBL	A0A161WWC3	0.0	A0A161WWC3_DAUCS; Uncharacterized protein
STRING	Gorai.012G017800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	2e-25	myb domain protein 109

Link Out ? help Back to Top
Phytozome	DCAR_011771

Publications ? help Back to Top
Krogh A,Larsson B,von Heijne G,Sonnhammer EL Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol., 2001. 305(3): p. 567-80 [PMID:11152613] Tsay YF,Chiu CC,Tsai CB,Ho CH,Hsu PK Nitrate transporters and peptide transporters. FEBS Lett., 2007. 581(12): p. 2290-300 [PMID:17481610] Li JY, et al. The Arabidopsis nitrate transporter NRT1.8 functions in nitrate removal from the xylem sap and mediates cadmium tolerance. Plant Cell, 2010. 22(5): p. 1633-46 [PMID:20501909] Léran S, et al. A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants. Trends Plant Sci., 2014. 19(1): p. 5-9 [PMID:24055139]