PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011819
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 643aa    MW: 69949.4 Da    PI: 6.5789
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011819genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-06236256526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C  Gd+C +aHg
  DCAR_011819 236 PCPEFRK-GSCVKGDNCEYAHG 256
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0024815001443IPR002110Ankyrin repeat
SuperFamilySSF484031.71E-1616153IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-1617161IPR020683Ankyrin repeat-containing domain
CDDcd002041.07E-1117152No hitNo description
PfamPF127961.5E-855128IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.45960153IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00956090IPR002110Ankyrin repeat
PROSITE profilePS5008810.47295130IPR002110Ankyrin repeat
SMARTSM002480.002595127IPR002110Ankyrin repeat
PROSITE profilePS5010312.85231258IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5231257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4236258IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.427266290IPR000571Zinc finger, CCCH-type
SMARTSM0035629266289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MDAGFQEKKD GVLKHSSLLE LAADNNLTAF VCEIEEKGLD VDDVSFWYGR KFGSKKMGFE  60
ERTPLMMAAL YGSFEIVDYI VGTGRVDVNR ASSSDSATAL HCAAAGGAEG AARIVKFLID  120
ASADVNCVDV NGNKPGDFML KFSRKKELEM LLRGCESEEN DVCIEQVVEK KEYPVDVALP  180
DINVGLYGTD DFRMYSFKVK PCSRAYSHDW TECPFVHPGE NARRRDPKKF TYSCVPCPEF  240
RKGSCVKGDN CEYAHGVFES WLHPAQYRTR LCKDETGCAR KVCFFAHRVE ELRPLYASTG  300
SAMPSPKSGM VGSMDMGSLS PRGIGGSTTP MSPSVACSSP MGGNLWQNKV NLTPPALQLP  360
GSRLKTALNA RDMDLELELL GLGSIRTQQQ RQLIDDLSNL SSPSMWNNNN NRFGEMNPTN  420
LEDVFGSPDS SYLSQLQGLS PRVRASTPQM QSPTGHQMRQ NMNQLRASYP TNASSSPARK  480
APPTYGFDSS AAVAAAVMNS RSSAFAKQRS QSFIDRGAVS HNRPAGFSSA AANSASIMSP  540
NHADWSSPGG KLDWGYQEDM NNKLRKSASF GFGSGNAGAR NSGMNPSFVD EPDVSWVNSL  600
VKDVSSTGAG LYSSDQKHNA ANGVQLPAWA EQMYIEQEQM VA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017242303.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A162ALZ00.0A0A162ALZ0_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000698880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein