PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011831
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 270aa    MW: 31014.2 Da    PI: 8.1642
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011831genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.58.2e-1420103186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +Liea  e+  +l+rg+l++++W++v++++  +++g+   r+ +qCk++++ l+k+yk +k  +        s++p+f +le
  DCAR_011831  20 CWSEAATETLIEAWGERYVHLNRGNLRQKDWRQVADAVnvHRTGIkpPRTDIQCKNRIDTLKKKYKVEKLKAAP------SKWPFFYRLE 103
                  7************************************988777774579*****************99887775......58****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.1E-2619105No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDNQITLAPT RRPGGGRDDC WSEAATETLI EAWGERYVHL NRGNLRQKDW RQVADAVNVH  60
RTGIKPPRTD IQCKNRIDTL KKKYKVEKLK AAPSKWPFFY RLEELIGPSS MSVGTKKSKR  120
SSVLAKAKAK EMVGYSINTR MRMEDSSGSD ESEEFGGGRE EVEEEDDVAF SGGRKARMDY  180
VDFTEESAYK ELARAILRFG EIYERIESSK QQQMMELEKQ RMEFTKDLEV QRMNMFMDTQ  240
LELEKMKRIG NDRSNGGEIL GLLISYLLI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017242718.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A161WWI70.0A0A161WWI7_DAUCS; Uncharacterized protein
STRINGSolyc06g051120.2.12e-88(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137071215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.14e-60sequence-specific DNA binding transcription factors