PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_011832

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 167aa MW: 18405.2 Da PI: 6.4998

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_011832	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.3	1.6e-40	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C+aCk+l+r+C+++C +apyfp+++pkkf vhk+FGasnv+k+l+++ +e+reda+++lv+eAear++dPvyG++g i +lq +++ql+++la++k DCAR_011832 11 SCSACKLLKRRCVPNCLFAPYFPSDEPKKFVKVHKVFGASNVSKILNEVVKEQREDAVNTLVFEAEARLKDPVYGCIGEIASLQGKMAQLQHDLAVAK 108 6**********************************************************************************************998 PP DUF260 99 ee 100 ++ DCAR_011832 109 AR 110 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.652	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.9E-40	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MRSQEPRSTS SCSACKLLKR RCVPNCLFAP YFPSDEPKKF VKVHKVFGAS NVSKILNEVV 60 KEQREDAVNT LVFEAEARLK DPVYGCIGEI ASLQGKMAQL QHDLAVAKAR LAHCAVVKAS 120 TSLLPVDDQL EMLPFNPVYD GFFDGQVFDI DQTHVVDGFS EAPFLL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-43	6	126	6	128	LOB family transfactor Ramosa2.1
5ly0_B	3e-43	6	126	6	128	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017242719.1	1e-120	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	2e-57	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A166BZA2	1e-119	A0A166BZA2_DAUCS; Uncharacterized protein
STRING	VIT_13s0067g01450.t01	2e-64	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	7e-60	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	DCAR_011832

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]