PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_011845

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 179aa MW: 19913.7 Da PI: 6.9304

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_011845	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.7	1.1e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+C+kdC++apyfp+++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la+++ DCAR_011845 7 PCASCKLLRRRCTKDCTFAPYFPSDDPHKFAIVHKVFGASNISKMLQELPIHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQ 104 7**********************************************************************************************999 PP DUF260 99 ee 100 +e DCAR_011845 105 TE 106 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.587	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-44	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MGTGHSPCAS CKLLRRRCTK DCTFAPYFPS DDPHKFAIVH KVFGASNISK MLQELPIHQR 60 ADAVSSLVYE ANARVRDPVY GCVGAISYLQ NQVSQLQMQL AVAQTEMLCI QMQQEQPPLL 120 PPSMEPISAH DLIGDDKSSF YSNNMMPQYL NYSSSNSTNV IHDSLKRESF FGHDMHVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-49	2	108	7	112	LOB family transfactor Ramosa2.1
5ly0_B	9e-49	2	108	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017241428.1	1e-132	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	1e-72	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A166BZK4	1e-131	A0A166BZK4_DAUCS; Uncharacterized protein
STRING	VIT_13s0067g01880.t01	1e-91	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-71	LBD family protein

Link Out ? help Back to Top
Phytozome	DCAR_011845

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]