PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011967
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 511aa    MW: 57088.5 Da    PI: 6.7928
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011967genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.8e-13330375454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   h + Er+RR+++N++f+ Lr+llP+       K +Ka+ L  ++eYI  L
  DCAR_011967 330 HHMISERKRREKLNESFQALRTLLPPG-----SKKDKASLLSNTTEYITTL 375
                  68899********************95.....599*************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-17323395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.39E-13324380No hitNo description
PROSITE profilePS5088815.77326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-11330375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16330393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-14332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MDSIFQLSGD ARVAFLHQIS QTFGCTYICL WTYLPLPSNC LVFTDGIHHE ETNQSGLSSG  60
ITRAMRLFSE YRKSVIMIDN GRVPGLAFKN NLPYIEIKEN DLQAVASTQT QLQFYQEARI  120
KTAIYMGCKS GEIELGMSIN NQVNIELEMR TLFPDDFLRQ AIPRELSQPN DQNPHSSSSS  180
SMRSLSIDSP EGTPSNFLYN ISNNTSTSYN ISEPPSLPSS QAFMGQIRSV HQFPAAIDRE  240
DAAMTHAMLA VISSSSPASS TSSHQPLQNA SAFKSYRSAL STTSQITSRV HRQNMLKRAI  300
AFCRSNANLM PSSQEQTIQY ANRPTSNQMH HMISERKRRE KLNESFQALR TLLPPGSKKD  360
KASLLSNTTE YITTLKAEVE ELTRKNQTLE AQILQGSTND QDLLMASAFL ADQSHHVWIS  420
NSSESTSEGR NLSVIVKGDY CSMLDLSIQV VEFLKQLRYV SLLSLQADMQ MVEATSLIRL  480
VFRLKIEEGS KWDEMGFQEA VKNVVADIAR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334339ERKRRE
2335340RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238748.10.0PREDICTED: putative transcription factor bHLH041 isoform X1
TrEMBLA0A166C2U40.0A0A166C2U4_DAUCS; Uncharacterized protein
STRINGXP_008242363.11e-129(Prunus mume)
STRINGVIT_11s0016g02070.t011e-130(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-66bHLH family protein