PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012015
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 238aa    MW: 26241.3 Da    PI: 5.6927
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012015genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.2e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd  l+++ + +G+  +W t + + g++R++k+c++rw++yl
      DCAR_012015 14 KGAWSPEEDFTLKNYLQTHGSAgNWITLPLKAGLKRCGKSCRLRWLNYL 62
                     79******************999************************97 PP
2Myb_DNA-binding50.64.5e-1669111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T+eEd +++++ ++lG++ W+ Ia+++  gRt++++k++w++
      DCAR_012015  69 GPFTKEEDSIILNLYNKLGSR-WSVIASHLE-GRTDNDVKNYWNT 111
                      89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.561962IPR017930Myb domain
SuperFamilySSF466895.24E-2712109IPR009057Homeodomain-like
SMARTSM007176.3E-91364IPR001005SANT/Myb domain
PfamPF002491.6E-121462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-221569IPR009057Homeodomain-like
CDDcd001671.66E-61662No hitNo description
PROSITE profilePS5129423.52463117IPR017930Myb domain
SMARTSM007174.6E-1567115IPR001005SANT/Myb domain
PfamPF002492.1E-1469111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2570117IPR009057Homeodomain-like
CDDcd001678.73E-1270111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRAPCCDKS KVKKGAWSPE EDFTLKNYLQ THGSAGNWIT LPLKAGLKRC GKSCRLRWLN  60
YLRPDIKHGP FTKEEDSIIL NLYNKLGSRW SVIASHLEGR TDNDVKNYWN TKMRKKLLAA  120
KAGMNTEDNA STNLLYENAY GGYMEFITNS EFSGCPETKV QDYEIDTLSS FRDNANAGAS  180
WAENGGGGDH NELLFGSGSG LSLSCPAAGD DLLDGFDFLE EIMKSSDEME STLGHAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-231411727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240275.11e-177PREDICTED: transcription factor RAX1-like
RefseqXP_017240276.11e-177PREDICTED: transcription factor RAX1-like
RefseqXP_017240277.11e-177PREDICTED: transcription factor RAX1-like
SwissprotQ9FKL21e-64MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A166C4401e-175A0A166C440_DAUCS; Uncharacterized protein
STRINGXP_009799606.17e-70(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-67myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]