PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012021
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 449aa    MW: 50563.4 Da    PI: 6.978
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012021genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.13e-35602021128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........ 79 
                  lp+G++F+Ptd+el+ e+L +kve+k+      +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++        
  DCAR_012021  60 LPAGVKFDPTDQELM-EHLDAKVEAKElkshplI---DefipTIEGDdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqgg 152
                  799************.99*********5554332...133323555545**********.555666799******************73334555544 PP

          NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  DCAR_012021 153 ETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 202
                  778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-3856221IPR003441NAC domain
PROSITE profilePS5100532.5660221IPR003441NAC domain
PfamPF023659.5E-1661202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAEKYLEKGM KKSNINQMGS SMGSSHDLID AKLEEHQLCG SKHCPSCGHK LEGKPDWVGL  60
PAGVKFDPTD QELMEHLDAK VEAKELKSHP LIDEFIPTIE GDDGICYTHP EKLPGVTRDG  120
LSRHFFHRPS KAYTTGTRKR RKIQTECDLQ GGETRWHKTG KTRPVMVNGK QKGCKKILVL  180
YTNFGKNRKP EKTNWVMHQY HLGQHEEERE GELVVSKIFY QTQPRQCNWS DRINSTGTLA  240
AGEGNSSEPT SRRDSGSGSC SSSKEMVISS HRIDDHHLSV VGGVPLASYN PMDIQQLKDH  300
YSFVPFRKSF DDQLGSTGLE ASTAMETPVS MGLSQDHDLQ MSHHHQQMHH HHQSHTHDHP  360
HHQQLATSTA AFHISRPCHS ISTIISPPSL HQASIDILDE GSFHVSRMML QNENFQESAM  420
SNPQEAEWLK YSNFWPDPHD PDNPNHHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240218.10.0PREDICTED: NAC domain-containing protein 91 isoform X2
SwissprotQ9M0F81e-164NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A161WX340.0A0A161WX34_DAUCS; Uncharacterized protein
STRINGVIT_11s0016g02880.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-142NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]