PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012117

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 179aa MW: 20387.7 Da PI: 6.7918

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012117	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.7e-05	31	53	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C + Fs+ L H++ H DCAR_012117 31 YKCNFCERGFSNAQALGGHMNIH 53 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.07E-7	29	58	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.0E-5	29	55	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0064	31	53	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.635	31	58	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	33	53	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MESNRTDIVN QRRMVWSGSD GQEEIGEVRS YKCNFCERGF SNAQALGGHM NIHRKDRARM 60 KEFSDVEIPS STVVVSHQVP SPDYRSFLQS VASDRHDHLR NCANKRPLIF VDQDDEDSRR 120 RTGGIKEGMQ LPLFLESSST STQLRSRAFV DGYVEKTIQR SSSLELDLEL RLGPERHD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017239985.1	1e-130	PREDICTED: transcriptional regulator TAC1-like
TrEMBL	A0A166C6S2	1e-129	A0A166C6S2_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7463	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	7e-18	C2H2 family protein

Link Out ? help Back to Top
Phytozome	DCAR_012117