PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012190

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bZIP

Protein Properties

Length: 340aa MW: 38092 Da PI: 8.5131

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012190	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.6	4.1e-11	31	62	3	34
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 + k rr+++NReAA++sR+RKka++++Le DCAR_012190 31 DAKTLRRLAQNREAAKKSRLRKKAYVQQLESS 62 67999************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.3E-8	25	75	No hit	No description
SMART	SM00338	2.6E-5	29	95	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.979	31	75	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-8	32	66	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.0E-7	33	76	No hit	No description
PROSITE pattern	PS00036	0	36	51	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.4E-32	113	188	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MASDSLRPRP SENQHTEKRR GPGATSERTS DAKTLRRLAQ NREAAKKSRL RKKAYVQQLE 60 SSRIRLSQIE QDLQQSQTQG LLLGGSSGFG NISQGAAIFD MEYARWLDDD HRHMAELRTA 120 LQAHLSDSDL RTIVDRHIAH YDEIFHLKGV AAKSDVFHLI TGMWTSPAEH CFLWLGGFRP 180 SDLIKMLISQ LDLLTEQQLM DIYSLQHSSQ QAEAALSQGL DQLQQSLIDT IAIGSVSDGM 240 HHMAVALGKL ANLEGFVRQA DNLRQQTLHQ LHRIFTVRQA AKCFLVIGEY YGRLRALSSL 300 WASRPHPHQN LIGNDGSCQT TSTGLHMLQS SGHNHFNNF*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017243225.1	0.0	PREDICTED: transcription factor HBP-1b(c38)
Refseq	XP_017243226.1	0.0	PREDICTED: transcription factor HBP-1b(c38)
Refseq	XP_017243227.1	0.0	PREDICTED: transcription factor HBP-1b(c38)
Refseq	XP_017243228.1	0.0	PREDICTED: transcription factor HBP-1b(c38)
Refseq	XP_017243229.1	0.0	PREDICTED: transcription factor HBP-1b(c38)
Refseq	XP_017243230.1	0.0	PREDICTED: transcription factor HBP-1b(c38)
Swissprot	Q93XM6	1e-170	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A166C8K9	0.0	A0A166C8K9_DAUCS; Uncharacterized protein
STRING	XP_009779356.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-156	bZIP family protein

Link Out ? help Back to Top
Phytozome	DCAR_012190

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]