PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012209

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 243aa MW: 27531 Da PI: 6.5148

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012209	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	140.4	1.1e-43	5	135	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +pGfrF Pt+eelv++yL ++++g++ ++l++vi+ vdiy++eP++Lp+ +++++++w+fF++ ++++a+g r+nr+t+sgyWkatg+ v+s DCAR_012209 5 QPGFRFYPTEEELVSFYLSHRLQGHNqTDLDRVIPVVDIYDLEPSQLPNysgeLCREDKEQWFFFVPMHEREARGGRTNRTTASGYWKATGSPSYVYS 102 69*******************9985677778***********646654445777********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyr 127 ++++++g+kkt+v+y+g+ap g+kt+W m+ey+ DCAR_012209 103 SQNKVIGVKKTMVYYRGKAPLGRKTRWKMNEYK 135 ******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-45	4	164	IPR003441	NAC domain
PROSITE profile	PS51005	45.217	4	166	IPR003441	NAC domain
Pfam	PF02365	3.4E-23	6	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MATFQPGFRF YPTEEELVSF YLSHRLQGHN QTDLDRVIPV VDIYDLEPSQ LPNYSGELCR 60 EDKEQWFFFV PMHEREARGG RTNRTTASGY WKATGSPSYV YSSQNKVIGV KKTMVYYRGK 120 APLGRKTRWK MNEYKAIEEQ VIAGASTSCA APRLRHEMSV CRVYVISGTF RAFDRRPLGT 180 AIMEPVDEPQ DGQENIVTRT SSSAEYIYRE TDIGNTMIID NAGVSCSEPM IIHHAAPFSG 240 ED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-30	3	164	19	166	NAC domain-containing protein 19
3swm_B	2e-30	3	164	19	166	NAC domain-containing protein 19
3swm_C	2e-30	3	164	19	166	NAC domain-containing protein 19
3swm_D	2e-30	3	164	19	166	NAC domain-containing protein 19
3swp_A	2e-30	3	164	19	166	NAC domain-containing protein 19
3swp_B	2e-30	3	164	19	166	NAC domain-containing protein 19
3swp_C	2e-30	3	164	19	166	NAC domain-containing protein 19
3swp_D	2e-30	3	164	19	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017238990.1	0.0	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	9e-79	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A162AN07	0.0	A0A162AN07_DAUCS; Uncharacterized protein
STRING	XP_009759500.1	2e-89	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-81	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	DCAR_012209

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]