PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012254

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

YABBY

Protein Properties

Length: 156aa MW: 17739.1 Da PI: 9.6187

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012254	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	151	1.1e-46	2	126	32	169
YABBY 32 fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsay 129 +vvtvrCGhC +l+svn+ + + + ++ + + + +++++s +++ + v+ e+ ++++++ pr+pp irPPekrqrvPsay DCAR_012254 2 TTVVTVRCGHCVNLFSVNMGPMLHSPPLQDL---------QRQAANGRRDCSSSS--SDECIKFVALES-AHDQHQQPPRMPP-IRPPEKRQRVPSAY 86 689****************9999888873.........233333333333333..333333333333.5677888899999.9********* PP YABBY 130 nrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 nrfikeeiqrik+ Pdishreafs+aaknWahfP+ih++ DCAR_012254 87 NRFIKEEIQRIKSVKPDISHREAFSTAAKNWAHFPHIHYD 126 ************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.6E-51	1	126	IPR006780	YABBY protein
SuperFamily	SSF47095	4.71E-7	72	121	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.0E-4	75	121	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MTTVVTVRCG HCVNLFSVNM GPMLHSPPLQ DLQRQAANGR RDCSSSSSDE CIKFVALESA 60 HDQHQQPPRM PPIRPPEKRQ RVPSAYNRFI KEEIQRIKSV KPDISHREAF STAAKNWAHF 120 PHIHYDQKRD NSNKLQKSDD HAVAGEITPK THHLY*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017238644.1	1e-114	PREDICTED: putative axial regulator YABBY 2 isoform X3
Swissprot	Q9XFB0	2e-52	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A166C9Z8	1e-113	A0A166C9Z8_DAUCS; Uncharacterized protein
STRING	VIT_06s0009g00880.t01	1e-59	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-42	YABBY family protein

Link Out ? help Back to Top
Phytozome	DCAR_012254

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]