PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012478
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 143aa    MW: 15587.2 Da    PI: 8.142
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012478genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.8e-061261371526
                  -TTTTT-SS-SS CS
      zf-CCCH  15 CkyGdrCkFaHg 26 
                  Ck+G++C+FaH+
  DCAR_012478 126 CKFGNKCRFAHS 137
                  ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.3E-10110138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.826111139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-7111138IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MPVPQYARSC SEYRSRLVPG SLFAANMICV EILLNDLHVF EVYGHIDALR CLYPLFTVFM  60
LCNTSGCQFG EGCHFLDYVP GGFSALGQMG NMGPGARKPA PPTYADGPAP AIKTKLCNQI  120
NTPEGCKFGN KCRFAHSILR LY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017227311.11e-46PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R04e-20C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A166CFZ01e-101A0A166CFZ0_DAUCS; Uncharacterized protein
STRINGVIT_13s0156g00320.t014e-26(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-10C3H family protein