PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012542

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

ERF

Protein Properties

Length: 179aa MW: 20034.2 Da PI: 9.6144

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012542	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.8	1.5e-19	38	89	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdp++ng +r++lg+f t eeAa+a+++a+ +l+g+ DCAR_012542 38 KYRGIRRRP-WGKYAAEIRDPNKNG--ARVWLGTFSTGEEAARAYDRAAYALRGH 89 8******.*******8887..************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038123	1.4E-25	8	165	IPR017392	AP2/ERF transcription factor ERF/PTI6
Pfam	PF00847	1.4E-14	38	89	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.3E-23	38	97	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.6E-31	38	97	IPR001471	AP2/ERF domain
CDD	cd00018	1.74E-19	38	97	No hit	No description
PROSITE profile	PS51032	24.46	38	96	IPR001471	AP2/ERF domain
SMART	SM00380	2.5E-35	38	102	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.1E-11	39	50	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.1E-11	62	78	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MDANHGSTKS YSNEVTSKIN TTRKTGKMAE PYVPKEIKYR GIRRRPWGKY AAEIRDPNKN 60 GARVWLGTFS TGEEAARAYD RAAYALRGHQ ALLNFPNENH YKTSPVQEIS EFSKNLVDEI 120 SNHKAPASSS ANYADAPGSS ISFKREKGAE FIEFEYVEDN LLDELLGTQN PNKRSRSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-29	38	98	14	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017241134.1	1e-130	PREDICTED: ethylene-responsive transcription factor ERF098-like
TrEMBL	A0A166CHK1	1e-129	A0A166CHK1_DAUCS; Uncharacterized protein
STRING	XP_006480088.1	2e-39	(Citrus sinensis)
STRING	XP_006443851.1	2e-39	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	2e-30	ERF family protein

Link Out ? help Back to Top
Phytozome	DCAR_012542