PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012553

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 248aa MW: 28194.9 Da PI: 7.419

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012553	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.1	6.3e-31	7	85	53	129
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++++wyfFs rd+kyatg r+nrat+sgyWkatgkd++v++ ++ vg++ktLvfyk+rap+g+kt W+mhe+rle DCAR_012553 7 LNSTDWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVVDPgtNSCIVGMRKTLVFYKNRAPNGVKTGWIMHEFRLE 85 45689***********************************9555666*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.51	1	103	IPR003441	NAC domain
SuperFamily	SSF101941	1.01E-38	4	103	IPR003441	NAC domain
Pfam	PF02365	2.8E-15	11	84	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MHHAAKLNST DWYFFSFRDR KYATGFRTNR ATTSGYWKAT GKDRTVVDPG TNSCIVGMRK 60 TLVFYKNRAP NGVKTGWIMH EFRLENPLIP PKEDWVLCRV FYKSKTEINS QLSPQNVYHS 120 EAKFAGAHTF PHSPQIMLPA ACNKNNYHLH QITTSQSPAP HHQNPNNLPT VPQLNPNFLH 180 LSHQIHTNHL NEMIMLKSAC DEEDPYGFLL NMEFEAESYM GGGMASSVED MKFEDDCCMP 240 SLIGHCD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-27	1	106	62	168	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-27	1	106	62	168	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-27	1	106	62	168	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-27	1	106	62	168	NO APICAL MERISTEM PROTEIN
3swm_A	5e-27	1	106	65	171	NAC domain-containing protein 19
3swm_B	5e-27	1	106	65	171	NAC domain-containing protein 19
3swm_C	5e-27	1	106	65	171	NAC domain-containing protein 19
3swm_D	5e-27	1	106	65	171	NAC domain-containing protein 19
3swp_A	5e-27	1	106	65	171	NAC domain-containing protein 19
3swp_B	5e-27	1	106	65	171	NAC domain-containing protein 19
3swp_C	5e-27	1	106	65	171	NAC domain-containing protein 19
3swp_D	5e-27	1	106	65	171	NAC domain-containing protein 19
4dul_A	5e-27	1	106	62	168	NAC domain-containing protein 19
4dul_B	5e-27	1	106	62	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017241031.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X1
TrEMBL	A0A161Y3J9	0.0	A0A161Y3J9_DAUCS; Uncharacterized protein
STRING	XP_009800923.1	3e-74	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1882	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-56	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	DCAR_012553