PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012554

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 293aa MW: 33475.8 Da PI: 5.9104

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012554	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.8	1.3e-50	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF P+deelv++yL+kkv++++++ ++ ++d++++ePw+Lp ++k ++++wyfFs rd+kyatg r+nrat+sgyWkatgkd++v++ ++ DCAR_012554 10 LPPGFRFYPSDEELVCHYLHKKVAHEDVSK-GTLVDIDLHTCEPWQLPDAAKLNSTDWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVVDPrTN 106 79***********************988.88***********88888999**********************************8556 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 vg++ktLvfyk+rap+g+kt W+mhe+rle DCAR_012554 107 CIVGMRKTLVFYKNRAPNGVKTGWIMHEFRLE 138 67*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-61	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.118	10	156	IPR003441	NAC domain
Pfam	PF02365	6.5E-28	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MGLRDIGAAL PPGFRFYPSD EELVCHYLHK KVAHEDVSKG TLVDIDLHTC EPWQLPDAAK 60 LNSTDWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV VDPRTNCIVG MRKTLVFYKN 120 RAPNGVKTGW IMHEFRLENP LIPPKEDWVL CRVFYKSKTE SSTELSPQNV CHSEATAGGD 180 IFPNAAQIML PAPFNKNNYH LHQIPSSQNP APHHQNPNTL QTFSQLNPNF LQLSHQFHTD 240 DLSEMIMIKS KCDDEDPYGF LLDMEFEEST MGDGMASSME DMKFEDDYCL FL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-47	9	159	16	168	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-47	9	159	16	168	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-47	9	159	16	168	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-47	9	159	16	168	NO APICAL MERISTEM PROTEIN
3swm_A	4e-47	9	159	19	171	NAC domain-containing protein 19
3swm_B	4e-47	9	159	19	171	NAC domain-containing protein 19
3swm_C	4e-47	9	159	19	171	NAC domain-containing protein 19
3swm_D	4e-47	9	159	19	171	NAC domain-containing protein 19
3swp_A	4e-47	9	159	19	171	NAC domain-containing protein 19
3swp_B	4e-47	9	159	19	171	NAC domain-containing protein 19
3swp_C	4e-47	9	159	19	171	NAC domain-containing protein 19
3swp_D	4e-47	9	159	19	171	NAC domain-containing protein 19
4dul_A	4e-47	9	159	16	168	NAC domain-containing protein 19
4dul_B	4e-47	9	159	16	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017240351.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBL	A0A169WE21	0.0	A0A169WE21_DAUCS; Uncharacterized protein
STRING	EOX94424	1e-119	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1882	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-88	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	DCAR_012554