PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012741
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CO-like
Protein Properties Length: 392aa    MW: 43051.9 Da    PI: 5.2038
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012741genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.6e-073372440
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htvv 40
                  +C++++ +++   C + +  lC++C  ++H +   H+++
  DCAR_012741 33 LICERCNLQPAFVRCVEENLSLCQNCDWTGHTNasgHKRQ 72
                 68*****************************778889976 PP
2CCT59.51.1e-20334377144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R+ a++RYkeK+ktRkFeK++rY++RKa+A+ R+RvKGrFvk+ 
  DCAR_012741 334 RNSAVQRYKEKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAG 377
                  999**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.12134IPR000315B-box-type zinc finger
CDDcd000211.88E-4234No hitNo description
PROSITE profilePS501199.4853074IPR000315B-box-type zinc finger
CDDcd000212.93E-53472No hitNo description
SMARTSM003360.873574IPR000315B-box-type zinc finger
PfamPF062034.5E-16334376IPR010402CCT domain
PROSITE profilePS5101715.398334376IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MVYCRSDAAC LCLSCDRNVH SANALSRRHS RTLICERCNL QPAFVRCVEE NLSLCQNCDW  60
TGHTNASGHK RQAVNCYSGC PSADELSSIW SFLLELPLAA DATCEKGIGS MSIADDGLAN  120
ASGPSRRNNS RNSSVTMTDL ENVNNSNEWK PSSMPQVDEN LVDQQIKFTK SISSKLGAKE  180
LELCEDDDFY EDFNMDELDL NIEKYEELFG VGHNDPQHLF NNNGIDSLFE MKGMTGANSI  240
SPGAYGAEGS LVGLENVVKP TDSNAASADS IRSCKTEPSG CFARQISNLS FSGVTGESSA  300
GDYQDCCASS MLLIGEQQPW CPQGSESSLA SDIRNSAVQR YKEKKKTRKF EKRVRYATRK  360
ARADVRKRVK GRFVKAGEAF DYDPLSETRS F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243760.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_017243761.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA91e-129COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A165ZDA00.0A0A165ZDA0_DAUCS; Uncharacterized protein
STRINGEOX935731e-158(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-105B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]