PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012761

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

G2-like

Protein Properties

Length: 209aa MW: 22878.8 Da PI: 9.6286

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012761	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.2	3.2e-32	113	166	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ DCAR_012761 113 PRMRWTSSLHSHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 166 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.85E-16	111	167	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.9E-29	111	167	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-24	113	166	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-7	114	165	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MASAASNMPD LSLQIRPPCT KPMRGYNNGG LMKKYMGERS DSASSGGSSD LSHEYGCHPR 60 SYLSLGLEMV SGLSPPPPAK YQHYQPHIYG RDFKRSSTSR TMNGASKRSA RAPRMRWTSS 120 LHSHFVHAVQ LLGGHERATP KSVLELMNVK DLTLAHVKSH LQMYRTVKNT DKGLIGQGQT 180 ETEDFKQGTE GTGGDGDACD YLLMPSYQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:19054366, ECO:0000269\|PubMed:20444210}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017246192.1	1e-152	PREDICTED: probable transcription factor KAN4 isoform X1
Refseq	XP_017246193.1	1e-152	PREDICTED: probable transcription factor KAN4 isoform X2
Swissprot	Q9FJV5	3e-51	KAN4_ARATH; Probable transcription factor KAN4
TrEMBL	A0A165ZCP0	1e-153	A0A165ZCP0_DAUCS; Uncharacterized protein
STRING	cassava4.1_011255m	2e-57	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12262	18	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	9e-54	G2-like family protein

Link Out ? help Back to Top
Phytozome	DCAR_012761

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS. Plant Physiol., 2016. 172(4): p. 2403-2415 [PMID:27794102]