PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012830
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 364aa    MW: 41827.2 Da    PI: 6.8822
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012830genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.91.3e-062983252855
                  HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  28 eereeLAkklgLterqVkvWFqNrRake 55 
                  +e+  LA+++gL+++q+ +WF N+R ++
  DCAR_012830 298 TEKVALAESTGLDQKQINNWFINQRKRH 325
                  67889********************885 PP
2ELK37.93.7e-13207228122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK++LlrKYsgyL+sLkqE+s
  DCAR_012830 207 ELKNHLLRKYSGYLSSLKQELS 228
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.3E-2062106IPR005540KNOX1
PfamPF037906.5E-2263105IPR005540KNOX1
SMARTSM012562.4E-23114165IPR005541KNOX2
PfamPF037913.0E-22118164IPR005541KNOX2
SMARTSM011881400123143IPR005539ELK domain
PROSITE profilePS5121311.296207227IPR005539ELK domain
SMARTSM011883.5E-7207228IPR005539ELK domain
PfamPF037892.5E-10207228IPR005539ELK domain
SMARTSM003890.0081229332IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-24232258IPR009057Homeodomain-like
PfamPF059202.5E-9297324IPR008422Homeobox KN domain
SuperFamilySSF466898.55E-10297340IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-24297331IPR009057Homeodomain-like
CDDcd000862.74E-7299329No hitNo description
PROSITE profilePS500719.685299328IPR001356Homeobox domain
PROSITE patternPS000270303326IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSRGFHNLPL ASNDVGESNR FHNPVVKMEA GSNNSARHKF RYNNYYQDNI DHQSSNEAVA  60
AEAIKAKIIA HPQYSSLLQA YMDCQKVGAP AEVVARLGAI RHEFEVGQQQ ASASCGETCK  120
DPELDQFMEA YYHMLVKYRE EISRPLQEAT DFMQRIETQL NMLTTAPRQI LNSDEKCEGI  180
GSSEEDQDNS GGETDLPEID PRAEDRELKN HLLRKYSGYL SSLKQELSKK KKKGKLPKDA  240
RQKLLSWWDL HYKWPYPSVR KFSIHSCILM YIPKNEIHSC ITPDTYIIKW NVFMTQETEK  300
VALAESTGLD QKQINNWFIN QRKRHWKPSE DMQFMVMDGI HSQNAALYME GHYVGEGPYR  360
LGP*
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017248167.10.0PREDICTED: homeotic protein knotted-1-like
SwissprotO041351e-146KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A165ZAM60.0A0A165ZAM6_DAUCS; Uncharacterized protein
STRINGVIT_18s0001g08380.t011e-155(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49732333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-120KNOTTED-like from Arabidopsis thaliana