PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012875
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 326aa    MW: 36517.3 Da    PI: 5.4677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012875genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.5e-14118169155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ +r+l+P++     ++++ a+i   A++Y+k+L+
  DCAR_012875 118 QRMTHIAVERNRRKQMNEYLAVIRSLMPTS---FVQRNDQASIIGGAINYVKQLE 169
                  79***************************9...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-17116181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.33E-13116173No hitNo description
PROSITE profilePS5088815.275117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-14118181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MALENVLYPQ DSFCYTARDF WGCDYILPQL EQNNDFSLIS NKNVATNLQY EINLQRSCVS  60
SALLIDDFNN DQLRSRNNLS PDGANSSGRA EPPVTSTTDR KRRRRAKICK NKEDMESQRM  120
THIAVERNRR KQMNEYLAVI RSLMPTSFVQ RNDQASIIGG AINYVKQLEH QLQTLEAQHK  180
TTVADDSKSC CTAGSPRLFA DFFAFPQYPT CSSDEPRASS DNDPAVAEPE GGPAVVAYGE  240
IEVTVMESHA NLKMLTKKRP KQLVKIVAGL QSMWLTILHV NVTTVEQMVL YTLSLKIEEG  300
CQMNTVTEIA DAVNQLLAKI EEAEI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199103RKRRR
2118129RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244654.10.0PREDICTED: transcription factor bHLH94-like
TrEMBLA0A165Z9260.0A0A165Z926_DAUCS; Uncharacterized protein
STRINGXP_009781858.11e-92(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-85bHLH family protein