PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012980
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 199aa    MW: 22641.5 Da    PI: 7.4665
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012980genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.1e-151158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+ Ed  l+ +v+++G  +W++++r  g+ R++ +c++rw ++l
      DCAR_012980 11 KGRWTPGEDFMLASYVHEHGASNWNLVPRNTGLERSGISCRLRWMNHL 58
                     79********************************************97 PP
2Myb_DNA-binding41.82.5e-1364110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E+++++++ +++G++ W  Ia+ ++ gRt++ +k++w+++l
      DCAR_012980  64 RGKFTHHEEQIIIHYYARFGPHGWVNIAAQLP-GRTAYGVKNYWHNHL 110
                      89******************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.057658IPR017930Myb domain
SuperFamilySSF466894.23E-258106IPR009057Homeodomain-like
SMARTSM007176.1E-101060IPR001005SANT/Myb domain
PfamPF002494.2E-131158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-211265IPR009057Homeodomain-like
CDDcd001678.24E-101358No hitNo description
PROSITE profilePS5129421.73159114IPR017930Myb domain
SMARTSM007171.4E-963112IPR001005SANT/Myb domain
PfamPF002496.6E-1164110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2066114IPR009057Homeodomain-like
CDDcd001674.23E-966110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVRPPVPDAM KGRWTPGEDF MLASYVHEHG ASNWNLVPRN TGLERSGISC RLRWMNHLNP  60
DIKRGKFTHH EEQIIIHYYA RFGPHGWVNI AAQLPGRTAY GVKNYWHNHL KKKVDIVNGH  120
VDEPIENPIE NPVVAPVYQA PPFPAPSFAR EREDFDYPFI ARAPSFGPYL PTAQNPSFAR  180
EHEGSAYQPS IFTPLDHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2361152109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245833.11e-147PREDICTED: transcription factor MYB30-like
SwissprotQ9SN784e-40MYB94_ARATH; Transcription factor MYB94
TrEMBLA0A165Z6781e-145A0A165Z678_DAUCS; Uncharacterized protein
STRINGXP_010532312.15e-39(Tarenaya hassleriana)
STRINGXP_010546059.11e-38(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-42myb domain protein 94
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  4. Lee SB,Kim HU,Suh MC
    MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis.
    Plant Cell Physiol., 2016. 57(11): p. 2300-2311
    [PMID:27577115]