PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012982

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

MYB

Protein Properties

Length: 257aa MW: 27428.6 Da PI: 10.0575

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012982	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.3e-16	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed +lv +v+++G +W+++++ g++R++k+c++rw ++l DCAR_012982 11 KGQWTPDEDIKLVIYVQEHGASNWSLVPENAGLKRSGKSCRLRWVNHL 58 799******************************************996 PP
2	Myb_DNA-binding	49.8	7.6e-16	65	109	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++T eE++++++ +++lG++ W++Ia+++ gRt++++k++w++++ DCAR_012982 65 GKFTHEEELIIKHHHALLGNR-WAAIAAHLT-GRTDNDVKNYWYTHM 109 79*****************.****9.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.839	6	58	IPR017930	Myb domain
SuperFamily	SSF46689	2.71E-28	9	105	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-12	10	60	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-15	11	58	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-22	12	64	IPR009057	Homeodomain-like
CDD	cd00167	6.20E-11	14	58	No hit	No description
PROSITE profile	PS51294	22.763	59	113	IPR017930	Myb domain
SMART	SM00717	3.3E-14	63	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.4E-23	65	113	IPR009057	Homeodomain-like
Pfam	PF00249	2.8E-14	65	108	IPR001005	SANT/Myb domain
CDD	cd00167	9.13E-12	66	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MVRPPVVAAK KGQWTPDEDI KLVIYVQEHG ASNWSLVPEN AGLKRSGKSC RLRWVNHLRP 60 GIKVGKFTHE EELIIKHHHA LLGNRWAAIA AHLTGRTDND VKNYWYTHMK KKLDKVDGPV 120 DEPTKNPVAP PSTLALVAAP PAVAPTLPPT LDPAVAPTVA SVAPPTLAPA AAPPTVTHAV 180 TIPVVTHAAT PVFAHRCVLP TPTFAHASVF APDRAVFDNP LTAPTSSFAS GRAILDYSFT 240 APAPAPNFVR GREGFN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-26	11	114	7	109	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245831.1	0.0	PREDICTED: transcription factor MYB30-like
Refseq	XP_017245832.1	0.0	PREDICTED: transcription factor MYB30-like
TrEMBL	A0A165Z660	0.0	A0A165Z660_DAUCS; Uncharacterized protein
STRING	XP_010532312.1	6e-51	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28910.1	1e-51	myb domain protein 30

Link Out ? help Back to Top
Phytozome	DCAR_012982