PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012989

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 182aa MW: 19441.5 Da PI: 8.5028

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012989	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.8	4.7e-35	33	108	6	81
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssss 81 +++h+kv+gR+RRvR++a+caar+F+L++eLG+++d++tieWLl+ a+pai+ +tgt++ +++ c++++ +s DCAR_012989 33 PVVKDRHSKVNGRGRRVRMPALCAARVFQLTRELGHKSDGETIEWLLRHAEPAIIRATGTGTMPSQVCTSGDPINS 108 5669*************************************************************99966555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.629	35	89	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.4E-30	36	108	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MASSNRVLSI KPAKSLKDLV PYKPGENIGV VKPVVKDRHS KVNGRGRRVR MPALCAARVF 60 QLTRELGHKS DGETIEWLLR HAEPAIIRAT GTGTMPSQVC TSGDPINSAG ISEMAPVAVS 120 GPVGFGAGMM IGGVGTDCRL DLWHGIGGDV VEYRNMGFTS LLMEPMMGEA EQQQVEQLSW 180 V*

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017247125.1	1e-131	PREDICTED: transcription factor TCP8-like
Swissprot	Q9C518	2e-34	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A165Z5X9	1e-130	A0A165Z5X9_DAUCS; Uncharacterized protein
STRING	Solyc09g008030.1.1	4e-44	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-36	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_012989

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]