PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_013000

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

M-type_MADS

Protein Properties

Length: 329aa MW: 37859 Da PI: 9.5827

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_013000	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39.1	9.5e-13	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ie r++tf R++ + KKA+EL +LC+++ avii + DCAR_013000 11 IEKAKVRTTTFLTRKKNLTKKAKELATLCGIKTAVIINPP 50 888999******************************9655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	15.446	1	47	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.3E-8	1	65	IPR002100	Transcription factor, MADS-box
CDD	cd00266	7.54E-16	2	90	No hit	No description
SuperFamily	SSF55455	9.42E-16	2	91	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-11	11	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MGRAKLNMEL IEKAKVRTTT FLTRKKNLTK KAKELATLCG IKTAVIINPP RQVTPQGRPL 60 KLETYPENDD VVLELIDKYK GQSSEDRKKR TSLLPCFFQE RNRKVQRALA KLRSTNVRSK 120 YPTWDLRFDN FMEEDLRNVA VFLENKIVDA KGKLGQMKAN VSNSNNIYNA YLLQQQQMML 180 TRERSMEVGN QNGINYLFTI NPPQTGFMQV PVPMPMPIQQ QNFAFLDHYQ DQRMVTFGHD 240 YIGGAPNIEY NANSSTPLYN YPMMTGDSIT YANNSLRDPQ NYSDEGRQPF AHHQMENHHM 300 RLGSTPHQMV ATSHQVDAHA QFDENHIE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	25	KAKVRTTTFLTRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017246734.1	0.0	PREDICTED: agamous-like MADS-box protein AGL103
TrEMBL	A0A165Z5L4	0.0	A0A165Z5L4_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2457	22	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	3e-20	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	DCAR_013000