PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013082
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 369aa    MW: 40989 Da    PI: 8.5558
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013082genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.6e-53171441128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeelvv+yLk+kv++ +l++  +i+e+d+yk++Pw+Lp+k+  +e+ewyfF++rd+ky++g r+nra++sgyWkatg+dk+vls  ++
  DCAR_013082  17 LPPGFRFHPTDEELVVHYLKNKVDAAPLPA-AIIAEIDLYKFDPWELPAKACFGEQEWYFFTPRDRKYPNGARPNRAATSGYWKATGTDKPVLSGtGS 113
                  79****************************.88***************8777899**************************************98788 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kk Lvfy g+ pkg kt+Wvmheyrl
  DCAR_013082 114 QKVGVKKALVFYGGKPPKGIKTNWVMHEYRL 144
                  89***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-648182IPR003441NAC domain
PROSITE profilePS5100561.36717182IPR003441NAC domain
PfamPF023651.1E-2818144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MESTDSSTAS RKQQPQLPPG FRFHPTDEEL VVHYLKNKVD AAPLPAAIIA EIDLYKFDPW  60
ELPAKACFGE QEWYFFTPRD RKYPNGARPN RAATSGYWKA TGTDKPVLSG TGSQKVGVKK  120
ALVFYGGKPP KGIKTNWVMH EYRLIPDDRN KYKPAADHSD ILANKKGSSR LDDWVLCRIY  180
KKKMNPQRPI LDHESCESLN ELMLPSFGQL QSPNKLPSLG LKASTTSNTY GSFLENDQTM  240
FEGMVPDHNT HIQNSPMNNS LSSFPSSAAN LLSLKPSFLG SNLYWNSQEG MTNTDGGGTN  300
CSSSSGKRFV TERGDHENVS FPSLLIQFPQ NSQASMQQAS TLGGNIGDQQ GVVRQHEPQS  360
MMNWYSQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-731418814171NO APICAL MERISTEM PROTEIN
1ut4_B4e-731418814171NO APICAL MERISTEM PROTEIN
1ut7_A4e-731418814171NO APICAL MERISTEM PROTEIN
1ut7_B4e-731418814171NO APICAL MERISTEM PROTEIN
3swm_A5e-731418817174NAC domain-containing protein 19
3swm_B5e-731418817174NAC domain-containing protein 19
3swm_C5e-731418817174NAC domain-containing protein 19
3swm_D5e-731418817174NAC domain-containing protein 19
3swp_A5e-731418817174NAC domain-containing protein 19
3swp_B5e-731418817174NAC domain-containing protein 19
3swp_C5e-731418817174NAC domain-containing protein 19
3swp_D5e-731418817174NAC domain-containing protein 19
4dul_A4e-731418814171NAC domain-containing protein 19
4dul_B4e-731418814171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246215.10.0PREDICTED: NAC transcription factor 25
SwissprotQ9LD443e-94NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A165Z3870.0A0A165Z387_DAUCS; Uncharacterized protein
STRINGXP_009769986.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.12e-85NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]