PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013130
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HB-other
Protein Properties Length: 600aa    MW: 65949.5 Da    PI: 4.4698
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013130genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.51.4e-0513532555
                 --HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
     Homeobox 25 psaeereeLAkkl..........gLterqVkvWFqNrRake 55
                 p +e  e LA+k            ++ +qV +WFqNrR+  
  DCAR_013130 13 PAREVLEALAQKFstspersgkfVVQMKQVWNWFQNRRYAI 53
                 677777777877777777777778999***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-4157IPR009057Homeodomain-like
PROSITE profilePS500719.183156IPR001356Homeobox domain
SuperFamilySSF466892.48E-71156IPR009057Homeodomain-like
SuperFamilySSF819959.42E-1086150No hitNo description
PfamPF167195.0E-41175301IPR032001SAWADEE domain
CDDcd000240.00436188223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MEAMLQANNA TVPAREVLEA LAQKFSTSPE RSGKFVVQMK QVWNWFQNRR YAIRARRVPG  60
KQNTSALSRD DSAVPKNVAQ AAQLQHPQPQ HPQSQHPQQQ HLQPQHTQPQ HPQLQQPQLQ  120
HPQPHLQPQH PQPQQHLQPQ HPQPQPAPLA TLRNVPEAPI HLPASAGSVA DSTPTEFEAK  180
SARDGAWYDV ASFLSHRNLE TGDPEVLVRF AGFGAEEDEW VDIRRHVRQR SLPCESSECV  240
AVLPGDLVLC FQEGKEQALY FDAHVLDSQR RRHDIRGCRC RFLVRYDHDQ SEEIVPLRKV  300
CRRPETDHRL QLLHALNDSA TAKQLKAGIE PRTASSLRVY PPPEVTERQL QKEEYVDVIP  360
VVPATSNSNL VAGSDTKIQQ PNGSEIEDAA PVKISDSLQG SGVQLLEAPG LITTVIQKDP  420
ITPLGKNTAT EDAVDEAATN IRGNQLDAVL NDVDVHEADT NIEGHPNVTQ ETNDVLIKAA  480
TNIEEDINGT SENDAMFNED VANTVEDMNG SPEDEAVLNE DAGNAEDQAV LNEDARNLED  540
GAVSNEDAGN VEGDTNGMLE DGTVLYEDGA NIEGNTNGMV EDVVLLNENV TGTSTTADQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-461723051134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-461723051134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-461723051134SHH1 SAWADEE
4iur_B2e-461723051134SHH1 SAWADEE
4iut_A2e-461723051134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-461723051134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-461723051134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-461723051134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-461723051134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-461723051134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017248270.10.0PREDICTED: uncharacterized protein LOC108219366
SwissprotQ8RWJ71e-115SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A165Z1Q30.0A0A165Z1Q3_DAUCS; Uncharacterized protein
STRINGXP_009628382.11e-132(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.14e-76sequence-specific DNA binding transcription factors;sequence-specific DNA binding