PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_013280

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

WRKY

Protein Properties

Length: 220aa MW: 24423.1 Da PI: 5.9549

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_013280	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.6	8.3e-31	65	121	3	58
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+vv+itY +eHnh DCAR_013280 65 DSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRKDPTVVVITYVSEHNH 121 99**********************998************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.1E-31	52	121	IPR003657	WRKY domain
PROSITE profile	PS50811	30.561	58	121	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-26	58	121	IPR003657	WRKY domain
SMART	SM00774	1.5E-35	63	123	IPR003657	WRKY domain
Pfam	PF03106	6.8E-26	65	121	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MRKHTRYANS SLHHDQDDPD TTSETAAGSP LSGDDTSTVL PPTKRNGGKR VVTVAFDADV 60 YPPPDSWAWR KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ VERSRKDPTV VVITYVSEHN 120 HLRRATKNSQ NTATVPAESP PREMAVLADQ TDTEPENMDF SDFFAEFGYF SHITSVILEI 180 PVTTSFRCLE PEAKPMYTRD EEDSLFADLG ELPGCSLIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-19	49	123	6	78	Disease resistance protein RRS1
5w3x_D	2e-19	49	123	6	78	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017246783.1	1e-164	PREDICTED: probable WRKY transcription factor 65
Swissprot	Q9LP56	1e-44	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A165YXI1	1e-162	A0A165YXI1_DAUCS; Uncharacterized protein
STRING	XP_008228947.1	5e-53	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7468	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	4e-47	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	DCAR_013280

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]