PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013418
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 275aa    MW: 30830.2 Da    PI: 6.1027
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013418genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.31.3e-32581681100
                  EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                  f+k ltpsdv+k++rlv+pk++ae++           g++ e++  l++ede ++ W+++++y+++s++yvltkGW++Fvk+++L++gD+vvF++ ++
  DCAR_013418  58 FEKPLTPSDVGKLNRLVIPKQHAERYfpiggassggaGESVEKGLILSFEDELNKIWRFRYSYWNSSQSYVLTKGWSRFVKEKQLQAGDTVVFERFRD 155
                  99********************************99966667999*************************************************9988 PP

                  SEE..EEEEE-SS CS
           B3  88 sefelvvkvfrks 100
                  ++ +++++++r+s
  DCAR_013418 156 DGDRFFIGWRRRS 168
                  88889*****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-4053172IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-3157167IPR015300DNA-binding pseudobarrel domain
CDDcd100178.93E-3057157No hitNo description
SMARTSM010195.5E-2658168IPR003340B3 DNA binding domain
PROSITE profilePS5086314.08558168IPR003340B3 DNA binding domain
PfamPF023621.2E-2958168IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSMNHLSSEK LWWMESPTKG AVPQNTLFDF NQNHQENHQS NQDGEDREGI VAEREAMFEK  60
PLTPSDVGKL NRLVIPKQHA ERYFPIGGAS SGGAGESVEK GLILSFEDEL NKIWRFRYSY  120
WNSSQSYVLT KGWSRFVKEK QLQAGDTVVF ERFRDDGDRF FIGWRRRSTA VAPPAGGWTP  180
GLYSGHPYPS QNSRPNGPPL PYQPHCPHAE RAEASAGVQN QTSSGSSRTL RLFGVDLECQ  240
LEEPSPDGPS QLAARIQDMH IQKATVEILL EDLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-47511671113B3 domain-containing transcription factor NGA1
5os9_B5e-47511671113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244730.10.0PREDICTED: B3 domain-containing protein At2g36080-like isoform X1
RefseqXP_017244731.10.0PREDICTED: B3 domain-containing protein At2g36080-like isoform X2
SwissprotQ8GYJ22e-64Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A162ADG70.0A0A162ADG7_DAUCS; Uncharacterized protein
STRINGVIT_08s0007g02810.t012e-81(Vitis vinifera)
STRINGXP_009600245.13e-81(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.13e-54B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]