PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_013493

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 440aa MW: 48869.6 Da PI: 8.2385

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_013493	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.4	8.4e-35	100	158	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+l+cprC s +tkfCy+nny+++qPr+fC++C+ryWt GG +r v vG+grrknk+ DCAR_013493 100 PDKILPCPRCTSLETKFCYFNNYNVNQPRHFCRKCQRYWTDGGNMRKVAVGAGRRKNKQ 158 7899*****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-27	88	157	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-29	102	158	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.627	104	158	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	106	142	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MNNSEAMCEV KDPAIKLFGK IIALPKSDSP ATLHRKSDAT PQIPVTSDPK NCGKEEISSV 60 SEIDEQNQIH NKDKTPLGIK LKVDKTEITD TREEKLLKKP DKILPCPRCT SLETKFCYFN 120 NYNVNQPRHF CRKCQRYWTD GGNMRKVAVG AGRRKNKQLG AQYLQVLAPR VTVQCAIDKN 180 PDIVDRHVIP GNDSLKTLVT SAENDKFHKF DSEKPQCETM GVLATKEWMT CANKSSIEEI 240 KEEQSQCGSS LTSVQDDETL QKVFRDEQGG LSESCKLLIP RQPIPCFPTP QGGFTWNPRW 300 NSTSPMVAAQ FSSEPTIHSN DTKTDKMNWF SAPVMAVPGL CTSTTMQFVP AAYWGLSCWP 360 IPTGNMPLAE SGTNCQITGK HPRDEDLIEA NKSKKHVIVP KTLRVDDSGE ALKSTVWKTL 420 GIEPSVNASL NNRAKSNTN*

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MNNSEAMCEV KDPAIKLFGK IIALPKSDSP ATLHRKSDAT PQIPVTSDPK NCGKEEISSV  60
SEIDEQNQIH NKDKTPLGIK LKVDKTEITD TREEKLLKKP DKILPCPRCT SLETKFCYFN  120
NYNVNQPRHF CRKCQRYWTD GGNMRKVAVG AGRRKNKQLG AQYLQVLAPR VTVQCAIDKN  180
PDIVDRHVIP GNDSLKTLVT SAENDKFHKF DSEKPQCETM GVLATKEWMT CANKSSIEEI  240
KEEQSQCGSS LTSVQDDETL QKVFRDEQGG LSESCKLLIP RQPIPCFPTP QGGFTWNPRW  300
NSTSPMVAAQ FSSEPTIHSN DTKTDKMNWF SAPVMAVPGL CTSTTMQFVP AAYWGLSCWP  360
IPTGNMPLAE SGTNCQITGK HPRDEDLIEA NKSKKHVIVP KTLRVDDSGE ALKSTVWKTL  420
GIEPSVNASL NNRAKSNTN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017246068.1	0.0	PREDICTED: cyclic dof factor 2-like
TrEMBL	A0A165YJN6	0.0	A0A165YJN6_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21330	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-49	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	DCAR_013493