PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_013495

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

ZF-HD

Protein Properties

Length: 103aa MW: 11107.8 Da PI: 8

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_013495	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	85	8e-27	21	73	4	57
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +Y eC+kNhAa++G avDGC+Efm++ geeg+aaal+CaAC CHR+FH+ ++ DCAR_013495 21 NKYTECRKNHAAHIGKFAVDGCCEFMAA-GEEGSAAALTCAACMCHRSFHKMRS 73 68***********************9.999****************8665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-15	16	78	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.0E-24	22	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.9E-22	22	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.515	23	72	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MIDMKEGDEQ GAKKEVKVTM NKYTECRKNH AAHIGKFAVD GCCEFMAAGE EGSAAALTCA 60 ACMCHRSFHK MRSEIIVIEI LQHYGKSSCC SSSVSRPASK SN*

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269\|PubMed:21455630}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020254212.1	3e-23	mini zinc finger protein 2-like
Swissprot	Q9LJW5	2e-19	MIF2_ARATH; Mini zinc finger protein 2
TrEMBL	A0A165YJL3	2e-68	A0A165YJL3_DAUCS; Uncharacterized protein
STRING	XP_010246148.1	8e-22	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	1e-21	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	DCAR_013495

Publications ? help Back to Top
Bollier N, et al. At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 2018. 30(1): p. 83-100 [PMID:29298836]