PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_013520

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bZIP

Protein Properties

Length: 350aa MW: 38380.5 Da PI: 7.8335

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_013520	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.5	8e-15	266	309	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a+++eLe kv Le+eN++L+++ DCAR_013520 266 RRQKRMIKNRESAARSRARKQAYTQELELKVSRLEEENERLRNR 309 79***************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-14	262	323	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.484	264	309	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.10E-22	266	307	No hit	No description
Pfam	PF00170	1.9E-12	266	309	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.1E-15	266	313	No hit	No description
SuperFamily	SSF57959	1.75E-12	266	321	No hit	No description
PROSITE pattern	PS00036	0	269	284	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MATQTMGSQG GYGSGSGGNA SRRAEEPRTD LLGRQSSMYN LTLDEVQDQL GDLGKPLSSM 60 NLDELLKSVW SAEANQGLGG VDFGDAQPGN VASSSSLLRQ SSVSLAKGLS KKTVDEVWQD 120 IQEGQKKSRL DRKMRERKST LGEMTLEDFL VKAGIVAEGE KNPGAVPVVD AIEIPQQSAP 180 QQAQWMPYQT PPVHQLAPPQ QQQNMFSVFM PGPPLPQTLP VTANPMMDGY ADAMSPSALM 240 DNVSDTQAPG RKRNASGVVV EKTVERRQKR MIKNRESAAR SRARKQAYTQ ELELKVSRLE 300 EENERLRNRQ ASCINCCIYF CECMYVIAYI LSIRGRVIGT IQNHDLVMG*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MATQTMGSQG GYGSGSGGNA SRRAEEPRTD LLGRQSSMYN LTLDEVQDQL GDLGKPLSSM  60
NLDELLKSVW SAEANQGLGG VDFGDAQPGN VASSSSLLRQ SSVSLAKGLS KKTVDEVWQD  120
IQEGQKKSRL DRKMRERKST LGEMTLEDFL VKAGIVAEGE KNPGAVPVVD AIEIPQQSAP  180
QQAQWMPYQT PPVHQLAPPQ QQQNMFSVFM PGPPLPQTLP VTANPMMDGY ADAMSPSALM  240
DNVSDTQAPG RKRNASGVVV EKTVERRQKR MIKNRESAAR SRARKQAYTQ ELELKVSRLE  300
EENERLRNRQ ASCINCCIYF CECMYVIAYI LSIRGRVIGT IQNHDLVMG*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU433293	0.0	EU433293.1 Daucus carota isolate WD966406 ABA response element-binding factor 2 (AREB2) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017246932.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_017246933.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_017246934.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	3e-75	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A165YIU6	0.0	A0A165YIU6_DAUCS; Uncharacterized protein
STRING	XP_010251669.1	1e-109	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3334	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-65	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	DCAR_013520

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]