PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_013521

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

G2-like

Protein Properties

Length: 249aa MW: 27266.7 Da PI: 7.9004

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_013521	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.1e-33	37	91	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl DCAR_013521 37 KQRLRWTSDLHDRFVDAIAQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 91 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.25	34	94	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-32	35	92	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-17	36	91	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-26	37	92	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-8	39	90	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-24	124	169	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MGLVPYKAQG SEQISPVAAV GGPPVETSPP PAGANAKQRL RWTSDLHDRF VDAIAQLGGP 60 DRATPKGVLR VMGVPGLTIY HVKSHLQKYR LAKYLPESPA DGSKEDKKIS GDSLDSMDSP 120 PGLQINEALR MQMEVQKRLH EQLEVQRQLQ MRIEAQGKYL QKIIEEQQKL GSSLVGTESQ 180 PGGEDKQFQS YSHQATDASV QPLSPRKKQK VINEGPDGSA PSLAAPEIGN HWDPKWYNND 240 SQFRGPMD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-22	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-22	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-22	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-22	37	94	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017243654.1	0.0	PREDICTED: protein PHR1-LIKE 1-like isoform X1
Swissprot	Q9SJW0	5e-74	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A165YIT3	0.0	A0A165YIT3_DAUCS; Uncharacterized protein
STRING	XP_008240600.1	1e-107	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2796	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-76	G2-like family protein

Link Out ? help Back to Top
Phytozome	DCAR_013521