PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_013566

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 373aa MW: 40980.4 Da PI: 7.251

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_013566	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.2	6.3e-13	303	348	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq DCAR_013566 303 SIAERVRRTRISERMRKLQELVPHM----DKQTNTADMLDLAVEYIKNLQ 348 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.665	297	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-15	300	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.23E-11	301	350	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-14	302	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.1E-10	303	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-12	303	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MFGDSRALFT DSNAIFPSNF SPKGGQEGEE DLFSKTRMNF DMNNIIQDNF NNKSMEFHSE 60 SFKGLDDDDE VNHKSLSNGF GLSSQVLSQF PRQSSGLDNT GLCRTGSSMG IDNQLKVGSG 120 LMRQNSSPAG FFSHISSQSG YGGVGGVNYR LPNGSNGELG PTASRLKSQT SLSSGIPSSL 180 GMLSRISEFD GGNIAPNGNE NAKNGTINGE TQYYASEYPL SSWNDSLHFA ENYSGLKREL 240 DADDDRLFSS SQHGEIPNRP SLLSHHLSLQ KNSSEISCMD KLLQDSVPCK IRAKRGCATH 300 PRSIAERVRR TRISERMRKL QELVPHMDKQ TNTADMLDLA VEYIKNLQKQ YKTLNDNRAN 360 CKCSAMQKQG LN*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MFGDSRALFT DSNAIFPSNF SPKGGQEGEE DLFSKTRMNF DMNNIIQDNF NNKSMEFHSE  60
SFKGLDDDDE VNHKSLSNGF GLSSQVLSQF PRQSSGLDNT GLCRTGSSMG IDNQLKVGSG  120
LMRQNSSPAG FFSHISSQSG YGGVGGVNYR LPNGSNGELG PTASRLKSQT SLSSGIPSSL  180
GMLSRISEFD GGNIAPNGNE NAKNGTINGE TQYYASEYPL SSWNDSLHFA ENYSGLKREL  240
DADDDRLFSS SQHGEIPNRP SLLSHHLSLQ KNSSEISCMD KLLQDSVPCK IRAKRGCATH  300
PRSIAERVRR TRISERMRKL QELVPHMDKQ TNTADMLDLA VEYIKNLQKQ YKTLNDNRAN  360
CKCSAMQKQG LN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017244143.1	0.0	PREDICTED: transcription factor bHLH130
Swissprot	Q66GR3	2e-79	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A162AC67	0.0	A0A162AC67_DAUCS; Uncharacterized protein
STRING	Solyc10g079050.1.1	1e-106	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5194	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-77	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_013566

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]