PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_013646

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 220aa MW: 24724 Da PI: 7.2214

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_013646	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.7	1.2e-14	47	94	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+e+E+rRR+riNs +++Lr+llP + + K +Ka+ L k+v+ +++L DCAR_013646 47 NNHKEAEKRRRQRINSHLDTLRTLLPAC----NSKTDKASLLAKVVQQVREL 94 58************************....9***********988877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-15	43	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.942	44	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-12	47	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-15	47	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.73E-13	48	97	No hit	No description
SMART	SM00353	1.3E-12	50	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MLAPEAWPED SDFHNCIIGD SDLGPFLPPM HSLCSSSETS KGTAASNNHK EAEKRRRQRI 60 NSHLDTLRTL LPACNSKTDK ASLLAKVVQQ VRELKQQSSH VMQLESSFPS DTDDVIVVAD 120 FFYSNNHQSL VIKASFCCDD RADLIADLIQ TLKSLRLSPL KAEMVTFGGR TRNVLILATD 180 KIDETNEVVE FLKEELRSLV HRSSSHFGDR FKRQRRLIN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017246073.1	1e-161	PREDICTED: transcription factor bHLH106
Swissprot	Q9LET0	4e-47	BH107_ARATH; Putative transcription factor bHLH107
TrEMBL	A0A162AC08	1e-160	A0A162AC08_DAUCS; Uncharacterized protein
STRING	POPTR_0006s03550.1	1e-64	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12841	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	2e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_013646

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]