PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013680
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 254aa    MW: 28301.5 Da    PI: 5.4327
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013680genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-172675255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aa+a+++a+  l+g
  DCAR_013680 26 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAARAYDEAACLLRG 75
                 799******.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-192683IPR016177DNA-binding domain
SMARTSM003805.3E-362689IPR001471AP2/ERF domain
PROSITE profilePS5103219.5852683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-272683IPR001471AP2/ERF domain
PfamPF008473.4E-122675IPR001471AP2/ERF domain
CDDcd000188.28E-182682No hitNo description
PRINTSPR003672.6E-72738IPR001471AP2/ERF domain
PRINTSPR003672.6E-74965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEIQFRPEGQ MSKFKGRNNR TSRSNKFVGV RQRPSGRWVA EIKDTTQKIR MWLGTFETAE  60
AAARAYDEAA CLLRGTNTRT NFVTHVSANS PLASRIKNLL KSKKGVVEKQ NLDTSSTNTS  120
SFTSSPTSSG GDYLSRGMVK DPDHLFDNAY KPDMQNFDDE FYLSSSYESN ISWGLESDGA  180
EKVSYAQEMW ELPKNNMAEA STGLEVSEFE HMKVDRQISA SLCAANGVQE YIQTVNDPND  240
SIWDLPALCS LLC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246709.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
RefseqXP_017246710.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotA0A1X9PY884e-86ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLA0A165YBV10.0A0A165YBV1_DAUCS; Uncharacterized protein
STRINGVIT_08s0007g07250.t016e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-39related to AP2 11
Publications ? help Back to Top
  1. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  2. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  3. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]