PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013698
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 381aa    MW: 42909.7 Da    PI: 7.062
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013698genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.91.4e-55201521128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  lppGfrFhPtdee++++yL++kv + ++++ ++i +vd++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat++gyWkatgkdke+++k   
  DCAR_013698  20 LPPGFRFHPTDEEIITHYLTHKVVNPSFTA-TAIGQVDLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATETGYWKATGKDKEIYRKakg 116
                  79*************************999.88***************99999*****************************************9765 PP

          NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +g lvg+kktLvfykgrapkgek++Wvmhe+rl
  DCAR_013698 117 qmsSGGLVGMKKTLVFYKGRAPKGEKSNWVMHEFRL 152
                  5555555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-6217180IPR003441NAC domain
PROSITE profilePS5100559.00920179IPR003441NAC domain
PfamPF023658.0E-2921152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEGGPIVVNL EGEEEVQLDL PPGFRFHPTD EEIITHYLTH KVVNPSFTAT AIGQVDLNKC  60
EPWDLPKKAK MGEKEWYFFC QRDRKYPTGM RTNRATETGY WKATGKDKEI YRKAKGQMSS  120
GGLVGMKKTL VFYKGRAPKG EKSNWVMHEF RLDGQFSYHN FPNKSVAKDE WVVCKVFHKN  180
ATMMNKKDSV TDSFVVEGVE GSPSLSSLMD SPYNSYVSNA NYNAIKHEEG SKGTIFAPSF  240
PAASDGKFAN QMQQHSYMTP NTNHQSTQIT YFQNYDQMAP NSILAYTQNA NVPYQGSSSM  300
GNYLQQQRFS SVASNGQCKV EPYSSNLSRS QDTGLSTDLT AEISSRQEVE RSKPTYNADH  360
VERASAGQLE DYDSFWNFQV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-541118211171NAC domain-containing protein 19
3swm_B6e-541118211171NAC domain-containing protein 19
3swm_C6e-541118211171NAC domain-containing protein 19
3swm_D6e-541118211171NAC domain-containing protein 19
3swp_A6e-541118211171NAC domain-containing protein 19
3swp_B6e-541118211171NAC domain-containing protein 19
3swp_C6e-541118211171NAC domain-containing protein 19
3swp_D6e-541118211171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244931.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9SQQ61e-100NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A162ACS80.0A0A162ACS8_DAUCS; Uncharacterized protein
STRINGPOPTR_0019s04710.11e-111(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.11e-102NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]