PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_013720

Common Name

C-HAP5B

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NF-YC

Protein Properties

Length: 250aa MW: 28196.6 Da PI: 4.6084

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_013720	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	171.6	8.7e-54	79	183	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql++fw++q i+++ dfknh+lPlarikki+kadedv+mis+eaPv+++kace+filelt+rswl +eenkrrtl+k+diaaa++rtdifdflvdi DCAR_013720 79 QLQAFWANQiqeIGQTPDFKNHSLPLARIKKIMKADEDVRMISSEAPVIFAKACEMFILELTMRSWLLTEENKRRTLQKNDIAAAISRTDIFDFLVDI 176 89****977778999***************************************************************************** PP NF-YC 96 vprdelk 102 +prdelk DCAR_013720 177 IPRDELK 183 **975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.94E-33	72	173	IPR009072	Histone-fold
Pfam	PF00808	2.9E-21	101	164	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.7E-36	102	179	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MDESEEPQQQ QEAVIDSAGQ MTYGVPHYHA VGLGVATGTP VVPVSAPTQH PTGATSQQQP 60 EYYEAQHVYQ QQQLQLRTQL QAFWANQIQE IGQTPDFKNH SLPLARIKKI MKADEDVRMI 120 SSEAPVIFAK ACEMFILELT MRSWLLTEEN KRRTLQKNDI AAAISRTDIF DFLVDIIPRD 180 ELKEEGLGIT KATIPLLGSP ADSVPYYYVP QQHAVEQAGF YPDQQAHPQL PYMSWQQPHE 240 HKDQEENGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-54	87	179	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	157	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB104613	0.0	AB104613.1 Daucus carota C-HAP5B mRNA for CCAAT-box binding factor HAP5 homolog, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017244940.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-2-like
Refseq	XP_017244941.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-2-like
Swissprot	Q655V5	2e-75	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A165YA22	0.0	A0A165YA22_DAUCS; Uncharacterized protein
STRING	EOY14151	3e-96	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3422	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	3e-76	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	DCAR_013720

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]