PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013845
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family SRS
Protein Properties Length: 371aa    MW: 40740 Da    PI: 7.7405
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013845genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702215.98.9e-671453013154
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel.......kskkqsal 86 
                   gt++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrre+qqql    s +++++                         k  +++ l
  DCAR_013845 145 IGTINCQDCGNQAKKDCMHMRCRTCCKSRGFQCQTHVKSTWVPAAKRREKQQQLLLGGSLQQQQNyqqqnqqL----SL---IrgesttpKRPRENPL 235
                  5899**********************************************99986654444443322222220....11...1222333344556678 PP

       DUF702  87 sstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                  ++t+l++++s   le+ ++P+ev+s+avfrcv+vs++d+++e++aYqtav+igGhvfkG+LydqG+e+
  DCAR_013845 236 ACTRLPTHTSG--LEVGHFPAEVNSPAVFRCVKVSAMDEADEQFAYQTAVNIGGHVFKGLLYDQGAEN 301
                  88888888755..88899***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.0E-65147300IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-27149191IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.8E-26251298IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSGFFTLAGR DQEQEDHKNN SIANSLFLFR NEEIYDKNFE LWQQYYQLHH QPKQTHQDVD  60
LSLVGCSSGS SNPRPSTIHH NNLNAFTITT EDEPSLVYNR VANNNNNRSP TNSSSGFGVM  120
MRPSGGNYGG GNDGNNNNMG SSSSIGTINC QDCGNQAKKD CMHMRCRTCC KSRGFQCQTH  180
VKSTWVPAAK RREKQQQLLL GGSLQQQQNY QQQNQQLSLI RGESTTPKRP RENPLACTRL  240
PTHTSGLEVG HFPAEVNSPA VFRCVKVSAM DEADEQFAYQ TAVNIGGHVF KGLLYDQGAE  300
NSSHRYGVVG ESSSTVAAIQ QPLNLITSGT STGPTTTNNP PGVTWIDPSI YPTPLNAFMA  360
GTQFFPPPRS *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4471938e-38AM447193.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X221597.12, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244825.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotQ9SD401e-79SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A165Y3960.0A0A165Y396_DAUCS; Uncharacterized protein
STRINGXP_009599252.11e-104(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.14e-71Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]