PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014190
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 239aa    MW: 26454 Da    PI: 7.6411
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014190genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-124592254
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +++h+e+ErrRR+riN  +++Lr+llP+       K +Ka+ L ++v+ +k+L
  DCAR_014190 45 CKNHSEAERRRRKRINGHLSTLRTLLPST-----IKTDKASLLAEVVRRVKEL 92
                 789*************************8.....69***********999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9584392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-104592IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-104694No hitNo description
SuperFamilySSF474591.28E-1247103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-124795IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-104998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.51E-5149209No hitNo description
CDDcd048733.31E-6150213No hitNo description
Gene3DG3DSA:3.30.70.2601.1E-5150190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEYLYSQELV ANPSSNIYES SLVEIFKAGS SNVATAETAK SVAACKNHSE AERRRRKRIN  60
GHLSTLRTLL PSTIKTDKAS LLAEVVRRVK ELKETTSELA AAAPSHDNNN EINTSDDHRN  120
HDEYMMVPSE ADELHLFHCD QYFGTVKAVV CCEDRPELMS DVIRALNSVQ ARVVRAEMAT  180
IGGRTKLVLW LLHGSLNSDE GLTAMRRALV MVMGSARVVL SDSSQDLPGG KRIRRSHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245966.11e-177PREDICTED: transcription factor bHLH30-like
TrEMBLA0A165XRV61e-175A0A165XRV6_DAUCS; Uncharacterized protein
STRINGXP_009605433.13e-65(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72832231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-32bHLH family protein