PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_014251

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bZIP

Protein Properties

Length: 401aa MW: 44742.6 Da PI: 7.5291

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_014251	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.5	5.7e-08	74	97	3	26
XXCHHHCHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKka 26 +k+ rr+++NReAAr+sR+RKk+ DCAR_014251 74 VDKVLRRLAQNREAARKSRLRKKK 97 5899******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.0E-4	68	98	No hit	No description
PROSITE pattern	PS00036	0	79	94	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.3E-29	160	235	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MNSSPTHYIS ARDMGVYEPI NQLSMFAEFD DNGWPNTSPT LLVDVDTKLD NQSGYTSHET 60 AGDSSKYDET NKRVDKVLRR LAQNREAARK SRLRKKKQKY NDSRNDVLQG TNISGVIDSG 120 HPGCSGAMNS VEKFTKQQLS AGIALFVLEY RNWVEKQDRQ ICELRNAISS DLPDGELRIL 180 VNDGMAHYSD LFRMKANAAK ADVFYLMSGM WKTSAERFLL WIGGFRPSEL LKVLLPHLDL 240 LEQQCSEVYN LIQSCQQAED AISKGMDKLQ QLLVDAVASG LLGGGSYIPQ VANAMEKLEP 300 LVSFIDQADH IRQETLQQMY RTLTTRQAAR GLLALGEYFQ RLRSLSSLWA TRPRRSHSTG 360 NSATDVSYSN YPPSSSGLAC LGRILPTSSI PEFFMGYPPS *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MNSSPTHYIS ARDMGVYEPI NQLSMFAEFD DNGWPNTSPT LLVDVDTKLD NQSGYTSHET  60
AGDSSKYDET NKRVDKVLRR LAQNREAARK SRLRKKKQKY NDSRNDVLQG TNISGVIDSG  120
HPGCSGAMNS VEKFTKQQLS AGIALFVLEY RNWVEKQDRQ ICELRNAISS DLPDGELRIL  180
VNDGMAHYSD LFRMKANAAK ADVFYLMSGM WKTSAERFLL WIGGFRPSEL LKVLLPHLDL  240
LEQQCSEVYN LIQSCQQAED AISKGMDKLQ QLLVDAVASG LLGGGSYIPQ VANAMEKLEP  300
LVSFIDQADH IRQETLQQMY RTLTTRQAAR GLLALGEYFQ RLRSLSSLWA TRPRRSHSTG  360
NSATDVSYSN YPPSSSGLAC LGRILPTSSI PEFFMGYPPS *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017246151.1	0.0	PREDICTED: transcription factor TGA1-like
Swissprot	Q39237	1e-136	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A165XPM4	0.0	A0A165XPM4_DAUCS; Uncharacterized protein
STRING	EOX92234	1e-154	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-128	bZIP family protein

Link Out ? help Back to Top
Phytozome	DCAR_014251

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]