PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014433
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 554aa    MW: 62108.4 Da    PI: 6.4249
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014433genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.92.3e-2748131186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+kqe+ aL+++r+em+ ++r+++lk+plW++vs k++e g++rs+k+C+ek+en+ k+ k++k+g+    +++ +t+++fd+l+
  DCAR_014433  48 RWPKQETIALLKIRSEMDAEFRDSSLKGPLWQQVSGKLAELGYNRSAKKCREKFENVYKYNKRTKDGRTT--KPDGKTYRFFDELQ 131
                  8*******************************************************************97..577889******98 PP
2trihelix1062.7e-33383468187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k e+ aLi +r+++++++++++ k+plWe++s+ mr+ g++r++k+Ckekwen+nk+ykk+ke++kkr +e+ +tcpyf+ql+a
  DCAR_014433 383 RWPKAEIEALILLRKDLDNKYNETSPKGPLWEDISAGMRRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PEDAKTCPYFHQLDA 468
                  8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001845107IPR001005SANT/Myb domain
CDDcd122033.78E-2447112No hitNo description
PROSITE profilePS500906.89947105IPR017877Myb-like domain
PfamPF138373.9E-1847133No hitNo description
SMARTSM007173.1E-4380442IPR001005SANT/Myb domain
PROSITE profilePS500907.027382440IPR017877Myb-like domain
CDDcd122031.11E-27382447No hitNo description
PfamPF138372.7E-23383469No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MLHGASPPPP PPGFAGIGGA PAMEVEEEGG GGGGEESERT SGSSGGNRWP KQETIALLKI  60
RSEMDAEFRD SSLKGPLWQQ VSGKLAELGY NRSAKKCREK FENVYKYNKR TKDGRTTKPD  120
GKTYRFFDEL QALDTQSSSQ PARIVATSSM LLNTTTQTIP TSTVSSTPSP IASTLNMSTN  180
PIPSIRVGDV PSFNMVSLSN STFSSSSTSS DEQRGERKRK RKSKWKDFFE GLMGEVIKKQ  240
EELEKKFLDE LEKRERDRMI REEAWRVQEM TRINREHELL VQERSMAAAK DAAVLEFLQK  300
ISDQQKNPSS NPITIPQLQQ LQLQIQPLVQ PSQPPPPPPP IPQQLVIPQP QPQPQPSTPA  360
VAPPQPQSSR GGTDNLQPPA PSRWPKAEIE ALILLRKDLD NKYNETSPKG PLWEDISAGM  420
RRMGYNRNAK RCKEKWENIN KYYKKVKESN KKRPEDAKTC PYFHQLDALY KEKSKLSHGS  480
ASTPMLPNIV QPEQQWPLQQ HRQQQQDTEM EDPESENNDN FNEGDEEDGE DDDDTGAGYE  540
IVPNKQPASS QGF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216221RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017247020.10.0PREDICTED: trihelix transcription factor GT-2-like isoform X1
RefseqXP_017247021.10.0PREDICTED: trihelix transcription factor GT-2-like isoform X2
SwissprotQ391171e-134TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A165XIK50.0A0A165XIK5_DAUCS; Uncharacterized protein
STRINGXP_009618661.11e-163(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-41Trihelix family protein