PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014458
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 280aa    MW: 30788.3 Da    PI: 5.2619
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014458genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-192978356
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g+
  DCAR_014458 29 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRGA 78
                 67******.**********965...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.7E-332891IPR001471AP2/ERF domain
PROSITE profilePS5103220.6792885IPR001471AP2/ERF domain
CDDcd000185.38E-312884No hitNo description
Gene3DG3DSA:3.30.730.105.6E-292985IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-212986IPR016177DNA-binding domain
PRINTSPR003673.5E-82940IPR001471AP2/ERF domain
PfamPF008475.5E-123177IPR001471AP2/ERF domain
PRINTSPR003673.5E-85167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MNKSPSSSKS SGKKSASKQD TSNSSGVRFL GVRRRPWGRY AAEIRDPSTK ERHWLGTFDT  60
AEEAALAYDR AARSMRGARA RTNFVYSDMP PGSSVTSILS PDDQNHNNTI NNMLLQHNFS  120
SSHYAPPEPT PPPRTNVNPE ASHFLTGQDF ANLESNTLYQ VPSHYHDVMN NGFGGTSVSQ  180
YSDGIELPPL PSNDFLDSNN MNSNYNEVDQ TAWSSTNYMA FSDCNTSTTS SQYDSMGSQS  240
YLGFDSNNYV HSPLFGQMPP VSNGDPFEAL ELGSSSYFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-202984359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-202484162ATERF1
3gcc_A3e-202484162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246561.10.0PREDICTED: ethylene-responsive transcription factor LEP
TrEMBLA0A162AB020.0A0A162AB02_DAUCS; Uncharacterized protein
STRINGXP_006446887.17e-73(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.18e-32ERF family protein