PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_014487

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 240aa MW: 27413 Da PI: 8.4002

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_014487	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92.4	7.3e-29	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lp G+rF+Ptdeel+ +yLk+k+ + +++ + + +++++++++P+ + +++ yfF+k++ ++ ++ r + a sgyWk+ kdk ++s++ DCAR_014487 14 LPIGYRFRPTDEELILHYLKPKLLSFPFPSSVIPHHLNLFHSHPSLFI---GDCKEKKYFFCKSSWNHFKNCRLSTADGSGYWKHISKDKYICSSSAF 108 699************************95556677***9996...3445688*******999999999**************9999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g+kk+ +f++g+ p++ kt+W m+e++l DCAR_014487 109 IIGTKKSYIFHQGNYPHSIKTQWAMKEFSL 138 9*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-36	11	161	IPR003441	NAC domain
PROSITE profile	PS51005	35.134	14	162	IPR003441	NAC domain
Pfam	PF02365	9.8E-19	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MMNRNEGNDS APNLPIGYRF RPTDEELILH YLKPKLLSFP FPSSVIPHHL NLFHSHPSLF 60 IGDCKEKKYF FCKSSWNHFK NCRLSTADGS GYWKHISKDK YICSSSAFII GTKKSYIFHQ 120 GNYPHSIKTQ WAMKEFSLLP SQTATLLSQN MEDWVIFCIY QRRRRGKKHQ VKKTRRDEDD 180 VIGAQCDDLM DFVVLDSTEP GPPLPSPSCS TDHGSANHAS TDQEETCSSS NIKPVSPHW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-19	13	168	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-19	13	168	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-19	13	168	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-19	13	168	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-19	13	168	19	174	NAC domain-containing protein 19
3swm_B	6e-19	13	168	19	174	NAC domain-containing protein 19
3swm_C	6e-19	13	168	19	174	NAC domain-containing protein 19
3swm_D	6e-19	13	168	19	174	NAC domain-containing protein 19
3swp_A	6e-19	13	168	19	174	NAC domain-containing protein 19
3swp_B	6e-19	13	168	19	174	NAC domain-containing protein 19
3swp_C	6e-19	13	168	19	174	NAC domain-containing protein 19
3swp_D	6e-19	13	168	19	174	NAC domain-containing protein 19
4dul_A	5e-19	13	168	16	171	NAC domain-containing protein 19
4dul_B	5e-19	13	168	16	171	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017246288.1	0.0	PREDICTED: NAC domain-containing protein 41-like
TrEMBL	A0A165XGU5	1e-179	A0A165XGU5_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13250	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14000.1	6e-34	NAC domain containing protein 84

Link Out ? help Back to Top
Phytozome	DCAR_014487