PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_014497

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

WRKY

Protein Properties

Length: 185aa MW: 20671 Da PI: 9.8509

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_014497	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.4	1.3e-32	103	161	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYY+Ct++gC+vkk+v+r ++d+ vv++tYeg H+h+ DCAR_014497 103 LDDGYRWRKYGQKAVKNNKFPRSYYKCTYQGCNVKKQVQRLSKDEGVVVTTYEGMHTHS 161 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.7E-34	88	161	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-29	95	162	IPR003657	WRKY domain
PROSITE profile	PS50811	29.597	98	163	IPR003657	WRKY domain
SMART	SM00774	1.3E-38	103	162	IPR003657	WRKY domain
Pfam	PF03106	2.6E-26	104	160	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MENYPMLFLG SGATAPNSLG SSNNNSRSNN STFYNNPNGF FGMLRSDVHG SSTSSEAKDG 60 AENSNSGSFQ VTESELGKKK KGDQKKAKKP RFAFQTRSQV DILDDGYRWR KYGQKAVKNN 120 KFPRSYYKCT YQGCNVKKQV QRLSKDEGVV VTTYEGMHTH SIEKPTDNFE QILSDMKICP 180 PTYN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-28	93	162	7	76	Probable WRKY transcription factor 4
2lex_A	1e-28	93	162	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017248451.1	1e-137	PREDICTED: probable WRKY transcription factor 75
TrEMBL	A0A165XGF6	1e-135	A0A165XGF6_DAUCS; Uncharacterized protein
STRING	XP_009343134.1	1e-67	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2204	24	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	5e-52	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	DCAR_014497