PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014567
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 154aa    MW: 17645.1 Da    PI: 9.6567
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014567genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.22e-5091381128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  lp+G+rF+Ptdeel+++yL+ k++g + e+ +vi+evd++k+ePwdLp  + +++ ++ew+fF+++d+ky++g+r+nrat +gyWkatgkd+ ++s  
  DCAR_014567   9 LPVGYRFRPTDEELINHYLRLKINGFHSEV-SVIREVDVCKCEPWDLPdlSLIHSIDNEWFFFCPKDRKYQNGQRANRATVAGYWKATGKDRFIKSGk 105
                  799************************999.99**************96447777899*************************************974 PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  + +++g kktLvfy+grap+ge+t+Wv+hey++
  DCAR_014567 106 GLNVIGRKKTLVFYTGRAPRGERTHWVIHEYSA 138
                  5567***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-545143IPR003441NAC domain
PROSITE profilePS5100550.4929153IPR003441NAC domain
PfamPF023652.1E-2610137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAVRPEGNLP VGYRFRPTDE ELINHYLRLK INGFHSEVSV IREVDVCKCE PWDLPDLSLI  60
HSIDNEWFFF CPKDRKYQNG QRANRATVAG YWKATGKDRF IKSGKGLNVI GRKKTLVFYT  120
GRAPRGERTH WVIHEYSATD EALSGTRPGQ VHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-42613612138Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246099.11e-113PREDICTED: NAC domain-containing protein 62-like
SwissprotF4JN351e-68NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A165XE211e-111A0A165XE21_DAUCS; Uncharacterized protein
STRINGXP_009759914.12e-76(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.16e-71NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]