PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014591
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HSF
Protein Properties Length: 540aa    MW: 60005.6 Da    PI: 5.9916
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014591genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.33.8e-362343252102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+e+g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++i+
   DCAR_014591 234 FLTKTYQLVDDAAIDDIISWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKRLLRDIQ 321
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   DCAR_014591 322 RRKI 325
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5162635.5721198IPR002905tRNA methyltransferase, Trm1
SuperFamilySSF533351.83E-242178IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF020052.4E-163182IPR002905tRNA methyltransferase, Trm1
Gene3DG3DSA:1.10.10.106.8E-38224317IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-58230323IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.56E-35231323IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.8E-32234323IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-20234257IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-20272284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340273297IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-20285297IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008033Biological ProcesstRNA processing
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0004809Molecular FunctiontRNA (guanine-N2-)-methyltransferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MPYCNELGLR MLIGGAIREA AVLGYYVTPL FSYYSYHGPV FRVLLRVNRG KLPISRYCSE  60
CGNSEAISWD KLGQLNCPCN SNVPGSLVVS GPLWTGPLHS KSYLEEMLNL AEEWGWIGNN  120
IGVDLEKLLK YMIDESDPQL PFGYIKLDEV SSRGKINSPP LRSMLSSLQK THHNYALSNY  180
RSLASQLFLT RSALITRIHS RFFLHISVDA MAPPPVNGGE SNTAESSRSL PTPFLTKTYQ  240
LVDDAAIDDI ISWNEDGSTF IVWNPTEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD  300
RWEFSNDCFR RGEKRLLRDI QRRKIANLAV ATAASQPPAA AAAVTVAVAS PVQFVRTMSP  360
TDSGEEQVIS SNSSQAIANQ LNRDSVPTTN TELVGENERL RKENMQLNKE LSQMKSLCNN  420
IYVMMSNYGN NNSNNTSANQ AESSSKEQAV LKPLDLLPLK RYCDDLKIGN ARSEPEEEDE  480
RSPRLFGVPI GSKRARSAEE EVKSEPLEAE DNSGGDPGVD DQDKPLGLGP CQQRSVASD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-2523432310110Heat shock factor protein 1
5hdn_A2e-2523432310110Heat shock factor protein 1
5hdn_B2e-2523432310110Heat shock factor protein 1
5hdn_C2e-2523432310110Heat shock factor protein 1
5hdn_D2e-2523432310110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243774.10.0PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ9SCW46e-92HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A165XD490.0A0A165XD49_DAUCS; tRNA (guanine(26)-N(2))-dimethyltransferase
STRINGXP_010278594.11e-110(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-83heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]