PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014671
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 246aa    MW: 27216.7 Da    PI: 5.456
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014671genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.1e-135598755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   Er+RR+++N+++  Lr ++P+      +K++Ka+i++  ++YI++Lq
  DCAR_014671 55 VSERNRRQKLNDRLYALRAIVPNI-----TKMDKASIVKDSINYIQELQ 98
                 57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1714897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1750113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.68E-1451102No hitNo description
SMARTSM003539.1E-1654103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1754112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-105698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEDSNEYQWY WETNRFYNAE ELIGSLSLDN TLSAYVDPSA ADGGQPSSGA SRNIVSERNR  60
RQKLNDRLYA LRAIVPNITK MDKASIVKDS INYIQELQEQ EERIQGEIAQ LEYSRACENQ  120
ADQTSLCKKN KRTVHEQQHL SSYVSGGAGS SASPPIQVIE IKVSSVVAKT IVASVICSKR  180
TNTIIKLGEA LESLKFKIIT ANITSFSATL TMTVFIEADE KEIDTVKIKI ETAIAAVNQR  240
NPMSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-135398954Transcription factor MYC2
5gnj_B2e-135398954Transcription factor MYC2
5gnj_E2e-135398954Transcription factor MYC2
5gnj_F2e-135398954Transcription factor MYC2
5gnj_G2e-135398954Transcription factor MYC2
5gnj_I2e-135398954Transcription factor MYC2
5gnj_M2e-135398954Transcription factor MYC2
5gnj_N2e-135398954Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15160RNIVSERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245640.10.0PREDICTED: transcription factor bHLH35-like
TrEMBLA0A165XA361e-180A0A165XA36_DAUCS; Uncharacterized protein
STRINGXP_008223870.12e-80(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.17e-53bHLH family protein